Gene Dshi_4071 details

Gene Information

• Locus tag: Dshi_4071
• ID: 5714623
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dinoroseobacter shibae DFL 12
• Kingdom: Bacteria
• Replicon accession: NC_009958
• Strand: +
• Start bp: 3168
• End bp: 6497
• Gene Length: 3330 bp
• Protein Length: 1109 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 641276980
• Product: parallel beta-helix repeat-containing protein
• Protein accession: YP_001542276
• Protein GI: 159046607
• TIGRFAM ID: [TIGR01965] VCBS repeat

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 9
• Fosmid unclonability p-value: 0.041867
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCAGGTT CCTCCTACTT CAAGGATTAC ACTGCCCATC AAAACGCCAC CATCCTTGTT 
TCCAGCACAG AAGAACTCAA TGCCGCTGTG GCGGAGCTTG CTGGCACGAC CGGGGGTACG 
GTTCTGCTCT CGGGTGAGGC TGGTCCCTAC CGATTGGATG CGCGCAACCT CGGCGATAGT 
GCCGAGAGCG CGGTTCTGAT CACCTCCCAA GACTCGAACA ACCCCGCGCA ATTAAAGCAG 
GTCTATATCG ACAACAGTGT CTATCTCAGC CTGACCGATG TGACGATCGA TAGCGGGGAT 
TACGGATTCG AGCGGTCAGG CCATCTCCAT GACATCTATG TAAAGTCCGG AGCGCATCTG 
CAATTCGTCG ATCTGACCAT GACCAGCACT GCCGAAGCCC CCCTCGGCTT CGATGACGAC 
ACCGTGAAGG CCGAGGATGC CGTCTATCTG CGCAATGCCT CGGACGTTCT ATTCGCCGAC 
AGCACGATCT CGAATTACTA CCACGGTATC AGTTTGGCAG GGGTACGCGA TACGATCGTA 
ACCGGCAACG ACATCTCCGC CTTGCAGGGG GACGGTATTC GCGGCGGCGG CGTGAACAAT 
GTTCTGGTCT CGGACAATCA CATCCATGAT TTCTTGGGTG CGACCAACGA GTACAACCAC 
CCAGACATGA TCCAGTTCTG GACCGGGTTC CCAGAGGGGA TGACCAACAC CGACCTGACG 
ATTACCGGTA ACCTGCTCAA TGCGGGCGAA GGCTCCGCTG CTCAGGGCAT TCTCGTACAG 
AACGAGGCCT TCGATGACGC GGGAGACCCT TTGGAGGGAG TTTATGGTCA AAACCTGACG 
ATCACGGACA ATGTCATCCA TTCGGGCATG TCTAATGGCA TCGGGATCAT CGGATACCAA 
GGGGTCGAGG TTGCCAACAA TTCGGTGCTT TGGAACGAGG GCGCCGTGCT GTCCCAGACG 
GCTGATGCCG TACCGGCCTC CAACCCTCCC TGGATCTTGG TACGCAACAG CTTGGAAGTC 
GAGACCGCTG GCAATGTCGC TCACTTGGTC CGGATCGAAA CCGAGGACCA GGCCGAGACC 
AATTACTTTC TGGACTACGA TAATCCGAGT GCGCCGAATT ATGCCTATGC CCATGTGATC 
GGCCTTGCCG CCGATGGCCA GACGGACGTC TACGACTTGC AATTCCGGCC CGATAGCCCA 
CTCAACGGGG TCTCTGGCGC TGAGGCCAGC ACTTGGACGC CCAGCGAGGC CCCGGTGAAC 
GCCGTGATCT CCCAGCAGCC CAGTCTCGAG GACCGCGCAG CGGTGGAGTT GTCGGCCCGC 
TATTCGACTG TGGATGGACA ACTGGTTGAT CCCGAGACTG CACAAGTCTT CTGGACCTTG 
GCCGATGGCA CCGTCCTGGA GGGCCTGGAG GTCACGGTAA CTTTCGACAC GCCGGGGCTG 
CACGAGGTCA CGCTCGATGT CCTTGCGCCT GATGGCAGTT CCGACAGCGC CACGAGATCC 
GTCGACATCC GCGGAAACGG CCTGTTCGAG GCGGATTTCG CCCGTTCCGA AACCTTTGGC 
GACGGTGTCG AGATTGTCGA TCCCAATGGC GAAGCGTTCT CCAAGAAGGG CGTGTTCACT 
CTGGATGGCG ACAGTGTTTT CGAGGTGACC CGCGGAAACC CAGAGTTCGA GACGCTTCAT 
ACCCTGTCCA TGGACGTCTC ATTCAAACCG GACGCGTTCG AAAAAAACGG CTGGCTGGTG 
AAATGGCTCA AGGCGGTCGA TCTGCGGGTG ACAGACGAGA AGGGGCTATG GCTCAAAATC 
GAGACCGATG CCGACGTTTA CGAGATCCGC ACCGAGGGTA ACCTTCTTGA GAAGGGCGAA 
TGGGCTGACA TCGCGGTCGA TTTCGACAGC CATGCGGGGC AGATGCGCTT GTCTCTGGAC 
GGCGAGGAAC TCGGCCGGAC CGACGTCGAA GGCACCATCT CGGGGTCGCA ATACGACCTC 
ACCTTGGGAG AGGGCCGGGG GCGCAGCGCC GAAGGGGAGA TCGATTACTT CTCGATGACC 
ACCCCGCCTG CAGGATCGGT GCTTGAGATC GGAGACCGGT TTCCGGAGGA ACCAGAAGAG 
CCCGAAGACG AAACACCCCC GCCGGTGGGT GTGGACGATA GCTTCATCAC GGACGAGGAT 
GTAAAACTCT CGGGCGATGT CTTGGATAAC GATATCAATG GCCAAGGCGC TATCCTAACG 
GTGAGCCTAC TCAGCGATGT GTCCAACGGC ATACTACTGC TGAACAACGA CGGTACCTTT 
GATTACACCG CCGCACCGGA CTTTAACGGC TCCGATAGCT TTACCTACAC AGTGTCGGAT 
GGGTCGTTCA CTGATACGGC CACGGTCTCG ATCACAGTCA ACTATGTGAA CGACAATCCT 
GTCCTGACCG CAGACACGGT GACGACGAAG GAGGACATCT CGGTTAATAT CGACGTGGTG 
GTAAATGACA CAGATGTCGA TGGCGACACG TTGAGCGTGT CGGTGGTCGG CGCGGCTTCG 
AACGGAACTA CATCAATAAA CCTCGACGGA ACAGTATCTT ATACTCCTAA TCTCCATTTC 
TTCGGCACCG ACAGCTTTAT TTACACAGCC TACGACGGAC ATGGCGGCGT CAGGTCGTCA 
TCGGTTACCG TCACTGTCGA TGCGGTTAAC GACGCGCCGG TGATCGAAAT CTCCAACTTC 
GCGGTCGACG AAGAACAGAC AACTGTCGGT AAGATAATCG CTTCTGACGT CGAAGACCAC 
GATTTAGACT TTGCCATCTC GGGCGGCGCG GATGCCGACC TCTTCGACAT TACGGAAGAC 
GGCGAACTCA GCTTCCTCGT TGCTCCGGAT TTTGAAGCGC CATTAGATGT TGGTGGTACC 
TCTGGCGACA ATATCTACGA AGTCGAGGTA TCGGCCTTTG ACACTAGGGG TGCGTTGAGC 
AGTGCACTCT TCAACGTCGC AGTAAAGGAT GTAGATGAGG GCGTCAGGCC GATCGAGGTC 
CTCGGGACGG GGGACAACGA CGTGCTGACC GGAACCGTGG CAGACGAGCG CCTCATCTCA 
CATGGCGGCA GAATAGACCG GATGACCGGC GGTGGGGGTG CAGATGAATT TGTCTTCGGC 
CCTGAACTCG ACAACAACCA ACGCGAACTC GATATTATCT ACGACTACGA CACCGATGAT 
ACGATCATAC TGGGCTCTGA TGACTATCGA TTAATTTCTC TCGGAAATAG TGTATTGATC 
CATCACAACG ACGACGGCGA CTTGATCTAT GTGCTAGGAA CAGAAGCAGA GAGTTTAATG 
ATCGAAATTG AAAACTCCGC CGTTCTATAA 

 

Protein sequence

MSGSSYFKDY TAHQNATILV SSTEELNAAV AELAGTTGGT VLLSGEAGPY RLDARNLGDS 
AESAVLITSQ DSNNPAQLKQ VYIDNSVYLS LTDVTIDSGD YGFERSGHLH DIYVKSGAHL 
QFVDLTMTST AEAPLGFDDD TVKAEDAVYL RNASDVLFAD STISNYYHGI SLAGVRDTIV 
TGNDISALQG DGIRGGGVNN VLVSDNHIHD FLGATNEYNH PDMIQFWTGF PEGMTNTDLT 
ITGNLLNAGE GSAAQGILVQ NEAFDDAGDP LEGVYGQNLT ITDNVIHSGM SNGIGIIGYQ 
GVEVANNSVL WNEGAVLSQT ADAVPASNPP WILVRNSLEV ETAGNVAHLV RIETEDQAET 
NYFLDYDNPS APNYAYAHVI GLAADGQTDV YDLQFRPDSP LNGVSGAEAS TWTPSEAPVN 
AVISQQPSLE DRAAVELSAR YSTVDGQLVD PETAQVFWTL ADGTVLEGLE VTVTFDTPGL 
HEVTLDVLAP DGSSDSATRS VDIRGNGLFE ADFARSETFG DGVEIVDPNG EAFSKKGVFT 
LDGDSVFEVT RGNPEFETLH TLSMDVSFKP DAFEKNGWLV KWLKAVDLRV TDEKGLWLKI 
ETDADVYEIR TEGNLLEKGE WADIAVDFDS HAGQMRLSLD GEELGRTDVE GTISGSQYDL 
TLGEGRGRSA EGEIDYFSMT TPPAGSVLEI GDRFPEEPEE PEDETPPPVG VDDSFITDED 
VKLSGDVLDN DINGQGAILT VSLLSDVSNG ILLLNNDGTF DYTAAPDFNG SDSFTYTVSD 
GSFTDTATVS ITVNYVNDNP VLTADTVTTK EDISVNIDVV VNDTDVDGDT LSVSVVGAAS 
NGTTSINLDG TVSYTPNLHF FGTDSFIYTA YDGHGGVRSS SVTVTVDAVN DAPVIEISNF 
AVDEEQTTVG KIIASDVEDH DLDFAISGGA DADLFDITED GELSFLVAPD FEAPLDVGGT 
SGDNIYEVEV SAFDTRGALS SALFNVAVKD VDEGVRPIEV LGTGDNDVLT GTVADERLIS 
HGGRIDRMTG GGGADEFVFG PELDNNQREL DIIYDYDTDD TIILGSDDYR LISLGNSVLI 
HHNDDGDLIY VLGTEAESLM IEIENSAVL