Gene Dshi_4062 details

Gene Information

• Locus tag: Dshi_4062
• ID: 5714591
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dinoroseobacter shibae DFL 12
• Kingdom: Bacteria
• Replicon accession: NC_009957
• Strand: +
• Start bp: 121761
• End bp: 122243
• Gene Length: 483 bp
• Protein Length: 160 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 641276974
• Product: cytochrome c class I
• Protein accession: YP_001542270
• Protein GI: 159046600
• COG category: [C] Energy production and conversion
• COG ID: [COG2010] Cytochrome c, mono- and diheme variants

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGATATC TCGTTTGGTC CCTTCCGATC ACTGTCGCAG CAGCCGCCTT CACGTATTGG 
CTCTCGACCA GTGCATCCTC GGATGTCGGC AGCGCGTCCA GGGCGGAGAG CTACGACATC 
GAAGAAGGCG CGTTGCTCTA CGCAGAAAAC TGTGCGTCTT GTCATGGCGC GGGTCTGGAA 
GGCCAGCCGG AATGGCGAAC GCCCGGCGCG GATGGGCGCC TGCCAGCACC ACCACATGAT 
GAGACGGGTC ACACCTGGCA TCATCCTGAC AGCCTGCTCT TCGATTACAC AAAACTGGGG 
GGTGCGGCGC TTCTGGCGCG TCAGGGCGTC GAATTCGACA GTGGCATGCC CGGTTTCGCA 
GACGTGCTGA CCGACCAGCA AATTCACAAC ATCCTGGCCT TCATCCGGTC CACCTGGCCA 
GACCGCATCC GCGAAGTCCA GGCCGCGCGG ACAGAAGCCG ACGAACAACG GGGAGAGAAC 
TAA 

 

Protein sequence

MRYLVWSLPI TVAAAAFTYW LSTSASSDVG SASRAESYDI EEGALLYAEN CASCHGAGLE 
GQPEWRTPGA DGRLPAPPHD ETGHTWHHPD SLLFDYTKLG GAALLARQGV EFDSGMPGFA 
DVLTDQQIHN ILAFIRSTWP DRIREVQAAR TEADEQRGEN