Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_4054 |
Symbol | |
ID | 5714583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009957 |
Strand | + |
Start bp | 113345 |
End bp | 114496 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641276966 |
Product | TPR repeat-containing protein |
Protein accession | YP_001542262 |
Protein GI | 159046592 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.331246 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCTGGG GTATTTTCGT TCTTTTGACG CTGGTCGCAA TCGGAATTGT CCTCTACCCG CTGCTGCTGT CCAAATCGAA CACTCTCACC AGAGGGGATG CGGTACCGGC GATCCTCGCC GATCAGATGC GGGAAATCCA ACGAGACATG GACCGCGGTT TGATTTCTGA ACAGGAAGCT CAAGCGGCCA GACTCGAGAT CAAGAAACGG ATCCTCGCGA CGACCCGCAA TTCGGAAGAA AAAGCCGGAT CATCCCGTAA TGGTGGCAGA GTCACTCTCG TTGTCGCGGC GGTCCTCGCG CCGGTTATTG CCGCGGGCTA CTATCTGACG ATGGGATCGC CGGAGGTTCC TTCAATGGCC TTCGCTGCCC GTGCAGAGGA GCGGGCACAG ACTGATGAAG TGACGGCGCT GGCAATACAA CTTCGCGAAA GGCTTGTATC CGATCCGACC GGCGGCCCTA GCGAAGGGTG GATGCTGTTG GGCCAGACCT ATCAGCGCAT GGGCAGAGCA GCCGATGCCG TCGAAGCCTT CGAAGTCGTT GCCGAACGGG AGGATGCCAC CTCCGCGACA TTCTCCATGC TGGCAGAGGC TGTCGCGGTT GCCAATGACG GCGTTGTTAT TCCACGGGCG AAATTGGCCA TTGATCGCGC TTTGGACCTT GACCCATCCA ATCCTGCGGC AACCTACTTC GAGTCTCTGT ATTACTTTCA GCAAGAAGAG ACGCGTAAGG CCTACGATCT GCTTGTTTCA CGACTGAATC AGGAAGAGGC TTACGTTCCC TGGATGGAGA CCTATGCAGC GCAGATCAAC CGGATTGCAG CGGCAGCTGA CCTTCCGGTC GTCAATCTAC CCAGCGGGCC GACGTCGCAA CCAGGCCCGA GTGCCGCAGA TGTCGCGGCG GCGTCGGAGA TGAATGACGC GGATCGCGCG GAGTTCATCC GATCGATGGT CTCGCGGCTG GCCGAGCGTC TTGAGGATGA ACCGGACGAT CTGGATGGTT GGATGCGGCT GGCAAATGCC TATACCGTCC TTCAGGAGCC CGATCGCGCC GTTGAGGCCT ACCGCAAGGC TGAAGCGCTG TTGGAGCAGC AGCCCGCCAG TGATCCTCGG CGTGCGGCGG TCCGTGCCGC GCTTGAGCGG CTCGGCGGCT GA
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Protein sequence | MIWGIFVLLT LVAIGIVLYP LLLSKSNTLT RGDAVPAILA DQMREIQRDM DRGLISEQEA QAARLEIKKR ILATTRNSEE KAGSSRNGGR VTLVVAAVLA PVIAAGYYLT MGSPEVPSMA FAARAEERAQ TDEVTALAIQ LRERLVSDPT GGPSEGWMLL GQTYQRMGRA ADAVEAFEVV AEREDATSAT FSMLAEAVAV ANDGVVIPRA KLAIDRALDL DPSNPAATYF ESLYYFQQEE TRKAYDLLVS RLNQEEAYVP WMETYAAQIN RIAAAADLPV VNLPSGPTSQ PGPSAADVAA ASEMNDADRA EFIRSMVSRL AERLEDEPDD LDGWMRLANA YTVLQEPDRA VEAYRKAEAL LEQQPASDPR RAAVRAALER LGG
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