Gene Dshi_4044 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_4044 
Symbol 
ID5714573 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009957 
Strand- 
Start bp105343 
End bp106005 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content60% 
IMG OID641276956 
ProductSNARE associated Golgi protein 
Protein accessionYP_001542252 
Protein GI159046582 
COG category[S] Function unknown 
COG ID[COG0398] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.786736 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGATGC GCATCCTTCT TATTGCGGTG TTCCTGATGG GAGTCGTCGC ATTGGCCTTC 
CCGGACGTCC TTGGCGTTGA CATTCGCCTG CCTGATCGCG CGGAAATTGA CCGCTGGATC 
GAGGCGGCAG GTCTTGCCGG ACCAATGGTT ATCGTGGCGC TTATGACAAT CGCTATCGTC 
GCAAGCCCCC TGCCCTCGGC GCCGATCGCA CTCGCCGCCG GAGCGGCTTA TGGGCACACG 
TTCGGGACAC TCTTTGTCGT TCTTGGCGCG GAACTCGGTG CGCTTGCCGC TTTTGGTCTG 
GCCCGCGGTC TCGGTCGTCC CTTCGTTGAG CGTCATCTCG GTCAGAAGAT TAACACAGGC 
CTGTTCGGAT CGCAGAACAC TCTGACCTTC TTGGTCTTCG GCAGTCGCCT GCTGCCGTTT 
CTGTCCTTCG ATATGATCAG TTACGCCGCA GGTCTGAGCA AGCTGCATCT TTGGAGGTTC 
GCGCTGGCCA CGATGGCCGG GATTATTCCA GCGAGTTTTT TGCTCGCTCA CATGGGCAAC 
CAGGCGATGA ACGGAGATGC CCGCACTGCC ACATGGACCG CGCTTGCGCT CGGTGGCTTT 
ACCGGCCTGT CGGTTCTCTT CGCCGCGACG CGAAAGACCG GTACACAAGG GGAGGAGAGC 
TGA
 
Protein sequence
MMMRILLIAV FLMGVVALAF PDVLGVDIRL PDRAEIDRWI EAAGLAGPMV IVALMTIAIV 
ASPLPSAPIA LAAGAAYGHT FGTLFVVLGA ELGALAAFGL ARGLGRPFVE RHLGQKINTG 
LFGSQNTLTF LVFGSRLLPF LSFDMISYAA GLSKLHLWRF ALATMAGIIP ASFLLAHMGN 
QAMNGDARTA TWTALALGGF TGLSVLFAAT RKTGTQGEES