| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4020 |
|---|
| Symbol | |
|---|
| ID | 5714549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009957 |
|---|
| Strand | + |
|---|
| Start bp | 86341 |
|---|
| End bp | 87543 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641276932 |
|---|
| Product | filamentation induced by cAMP protein Fic |
|---|
| Protein accession | YP_001542228 |
|---|
| Protein GI | 159046558 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3177] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.142086 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGAAA CACCCGCCAG GATCGAACCC TGCTTCTTCG AGGAGCATAT TCCCACAGAA
CTGGCAGACC TTTCGGTCGA CATCCAGAGG GAAACCACCG GGCTGGGACA AGGGTTGCAT
CCTGACAGCG CAGCCGAACT TGCCGATCTC GTCCGTGTGA TGAACTGCTA CTACTCCAAC
CTGATCGAAG GACACAACAC GCGCCCCCGC GACATCGAAA GGGCGCTGGC TGGTGCCGAG
CTTGAGGAAG AAACCCGTCC CCTCGCCCTT GAGGCCCGGG CGCACGTCAT CGTTCAACGG
GCCATCGACG AGATGCATCG CAAGGGCACC CTGCCCCGCC CCACATCCGT CGAATTCCTG
ACTTGGGTCC ATAAGAGCTT CTACGACGAG ATGCCGGAAG AGTTTCGGGT CATCGAACAT
CCCGACGGCA CACAAGAGCC CATCGTTCCG GGACGCATGC GGCAGGATGA TGATCGGGAA
GTTGCGGTCG GGCGCCACCT ACCTCCTTCA TCGTCGCGCG TCGCGGCATT CATGGACCAT
TTCGACAAAC GATTTCAGAT TGCGGCGCGG TCTTCGAGCG GACGGATCAT CGCGATCGCC
TCTGCGCATC ACCGGCTCAA CTACATCCAC CCTTTCCCGG ATGGTAACGG CCGTGTCAGC
AGACTGATGT CTCATGCCAT GGCCCTCACA GCGGGGATTG GTGGCCAAGG GCTCTGGTCC
GTATCACGTG GGCTGGCCCG CGGGCTAACC GATCGGGGCG AGTACAAACG GATGATGGAT
CTGGCCGACA GTCCACGCCG CGGAGACCGC GACGGACGGG GGAACCTGTC AGAAGCGGCA
CTGAAGACGT TTAGTGAATG GTTCCTAAAG GTGACGCTCG ACCAGATCAC CTTCTCAGCA
AGATTGTTCG ATCTCGGCGG ACTAGACCAA CGGTATCGTC GTCTTGTTGC AGATACCATC
GATGACAAGC GAGCGCCGGA ACTAATCTCG GCGGTTCTTC GGCATGGGGC ACTGGAACGA
GGCGATGCGC AGATTGTGCT CAAGACGTCC GAGCGTACTG CTCGCAACAC GCTGAGTAAG
CTGACCGCCG CCGGATACCT GACGTCCGCC TCGCCGAAGA CGCCGGTTCG GTTGGCGTTT
CCGTTGGATT ATCGAGAGCG GCTCTTTCCA AACCTCTTTG GAGACGGTGA CATGCCCGTG
TGA
|
|---|
| Protein sequence | MLETPARIEP CFFEEHIPTE LADLSVDIQR ETTGLGQGLH PDSAAELADL VRVMNCYYSN
LIEGHNTRPR DIERALAGAE LEEETRPLAL EARAHVIVQR AIDEMHRKGT LPRPTSVEFL
TWVHKSFYDE MPEEFRVIEH PDGTQEPIVP GRMRQDDDRE VAVGRHLPPS SSRVAAFMDH
FDKRFQIAAR SSSGRIIAIA SAHHRLNYIH PFPDGNGRVS RLMSHAMALT AGIGGQGLWS
VSRGLARGLT DRGEYKRMMD LADSPRRGDR DGRGNLSEAA LKTFSEWFLK VTLDQITFSA
RLFDLGGLDQ RYRRLVADTI DDKRAPELIS AVLRHGALER GDAQIVLKTS ERTARNTLSK
LTAAGYLTSA SPKTPVRLAF PLDYRERLFP NLFGDGDMPV
|
|---|
| |