| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4008 |
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| Symbol | |
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| ID | 5714537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | - |
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| Start bp | 74000 |
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| End bp | 76510 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641276920 |
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| Product | putative methylase/helicase |
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| Protein accession | YP_001542216 |
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| Protein GI | 159046546 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2263] Predicted RNA methylase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.621017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAGC CCAAGACGGC GAACCCGACT TTTTCAATCT CCGACGCTGC TCTCATCTCT
GCCCTCGCGC AGATCGGCCA GGAGGTCGAC CACCAACCCC TGCGCAGTTC AGCGCTCGCG
CGCATCATGC GCGAGACGTT TCATGGCAGC GATGCTGGCG GCGTCTGGGA GTGGCGCATG
GCCTACGACC TGAAGCAGGC CGCCGCCATC CAGGTGCTGC TGCGTGGGGA CGGCGCGGCA
TGTGACATCG CCACCGCAAA GCTGCTTGCC TCGCGGCTGC TGACGGAAAC GCGACGGTCA
GAGCAGCAGA TCCGGCTGCA GCAGTTTTCC ACGCCGTTGC CTTTCGCGGC AATGGCCGTG
CGGGCGGCAG CCATTCGCAA GGGCGAGACC GTTCTGGAGC CCTCGGCTGG CACCGGCGCC
TTGGCCGCTT TCGCCGCCCG GGCCGGTGCC ACGCTTTTGC TCAATGAAAT CGACCCCTTT
CGCCAGAGCC TATTGCGCGC GGTCTTTGGC GGCGATGTGA CGGGCCATGA CGGTGAGCAT
ATTGACGATC TGCTGCAGAC GCCGGTTCTG CCCGACGTCG TGGTGATGAA TCCGCCCTTC
GCTTCCTCGG TCGATCGCTC GCGAGACAAG CACATCGCCG CCAAGCATCT CATTGCGGCA
GCGAAGCGTC TCGCGCCCGG TGGGCGGCTG GTGGCGATCA TGCCGCCAGG ATTCACGCCC
GAACGCGATA CCGCGCATTG GTCCCGCGCC TGCGGTCTCC TGACGCCGCG CTTGGCGCTG
ACGATGCCGG GACAGGTCTA TCGCAAACTC GGCACCTCTG TGGAAACCCA GCTCATGGTC
TTCGACAAGG TGCAGGAAGA CGGCGAGATG ATCCGCGCCA GTGTTCGGGA CTTGGATGAA
GCCCTTCCTT TTGTCGACGC CGTGGCCGCA ACCCGGCCCG AGATGCGCCC CGTACAAAGG
GCAGTGGCGA TCCCTCACGG GCGACCGACC GTTCCATCCT CTGCCCCGCG TAAGACCGCC
GCTGCGCCTG TCGCCGCCTC CAAACCTCAG GCGAATGCCG TTGTCCAGCT CAGTATCAAA
AGCCTTGAGG CTCCGCGCGA CAACACGCCT GTCTCGGACA TCTATGCGCG TTACCGCCCT
CAGCGCATCG AGATCGCGGA CGCGCAGGAA CATCCCACGC CGCTCGTCGA GAGCATCGCC
ATGGCCTCTG TCGCGCCACC CGAACCTTCG GGTGCCGCCG GTTCGGAATT GCGTCTGCCC
GCACGATTGA TCAAGGAGGG ACATCTCTCC GAGGCACAGC TCGAGACCAT CATCATGGCC
AATGATGCCC ATGGGCGTAA CCTGCCAGGA CGGTTCACCA TCGATGACGA TCAGACCAAG
CTGACGCGCG CCGACGATGA CCCCGACGCA CGGGCCTATC GCCTCGGCTA TTTCCTCGGC
GACGGCACCG GCTGCGGCAA GGGCCGCGAA TGCGCGGGGC TCATCCTCGT GAACTGGCTG
GCCGGGCGCA GAAAGGCGAT CTGGGTCTCC AAATCCGCCA CGCTGATCGA GGACGCGATC
CGCGACTGGA TCGATCTTGG CGGCTCGCCC GCCGACATCC AGCCGCTCTC CAAATGGAAA
CCTGACCAGC CCATCCCGAT GGGCGACGGC ATCCTGTTCG TGACCTACGC CACGCTGCGC
TCGGCGGGCA AATGCGGCAC CACGCGGCTG AGCCAGATCC TTGACTGGAT GGGCGAGGAT
TTCGACGGTG TCCTCGCTTT TGATGAGGCC CATGCCATGC AGAACGCGGC GGGGTCCGAG
CAGGGCAGGG GCGTCAAACC CTCCCAGCAG GGCCTTGCGG GCCTCCGGCT GCAACTGGCA
GCACCCCGCG CTCGCGTCTT CTACATCTCG GCCACGGGTG CCACGAGCGT GCACAACCTA
GCCTATGCCG CGCGGCTGGG GCTCTGGGGG CAGGGCCCCG AATACCCCTT CCCAAGCCGC
GAGAGCTTCG TTTCTGCGAT GGAAGCCGGC GGTGTCGCTG CCATGGAGGT GGTCGCGCGC
GATCTCAAGA CGCTCGGGCT CTACACGGCC CGCGCCCTCA GCTTCGACGG CGTGGAGTAT
GACGTGCTCG AACACGCGCT CACCCCGGCC CAGATCGAGA TCTACGACGC CTATGCGGGT
GCGTTTCGCA CCATCCACCA CAATCTCGAA GCCGCGCTGA CGGCGACCGG CGTCAACGAC
GCCTCTGGCG AGACCAATGC CTCGGCCGCA CGCGCCTCGG CCAAGTCCCG CTTCGAGAGC
ACGAAACAGC GCTTCTTCAA CCATCTCCTG ATGGGGATGA AAGCCCCAAG CATTATCCGC
GCCATCGAGG ACGACCTGGC AACGGGCCAC GCGTGCGTCA TCCAGGTGGT CTCGACAGGC
GAAAGCCTGT TGAAGCGGCG GCTTGAGACG ATGGACGCAG AAGATGAGCT CGTCGAGGGG
GCCTTGACGC CGCGCGACTA CGTCTTATCC AAAGCTTTGG ATAACACGTA A
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| Protein sequence | MAKPKTANPT FSISDAALIS ALAQIGQEVD HQPLRSSALA RIMRETFHGS DAGGVWEWRM
AYDLKQAAAI QVLLRGDGAA CDIATAKLLA SRLLTETRRS EQQIRLQQFS TPLPFAAMAV
RAAAIRKGET VLEPSAGTGA LAAFAARAGA TLLLNEIDPF RQSLLRAVFG GDVTGHDGEH
IDDLLQTPVL PDVVVMNPPF ASSVDRSRDK HIAAKHLIAA AKRLAPGGRL VAIMPPGFTP
ERDTAHWSRA CGLLTPRLAL TMPGQVYRKL GTSVETQLMV FDKVQEDGEM IRASVRDLDE
ALPFVDAVAA TRPEMRPVQR AVAIPHGRPT VPSSAPRKTA AAPVAASKPQ ANAVVQLSIK
SLEAPRDNTP VSDIYARYRP QRIEIADAQE HPTPLVESIA MASVAPPEPS GAAGSELRLP
ARLIKEGHLS EAQLETIIMA NDAHGRNLPG RFTIDDDQTK LTRADDDPDA RAYRLGYFLG
DGTGCGKGRE CAGLILVNWL AGRRKAIWVS KSATLIEDAI RDWIDLGGSP ADIQPLSKWK
PDQPIPMGDG ILFVTYATLR SAGKCGTTRL SQILDWMGED FDGVLAFDEA HAMQNAAGSE
QGRGVKPSQQ GLAGLRLQLA APRARVFYIS ATGATSVHNL AYAARLGLWG QGPEYPFPSR
ESFVSAMEAG GVAAMEVVAR DLKTLGLYTA RALSFDGVEY DVLEHALTPA QIEIYDAYAG
AFRTIHHNLE AALTATGVND ASGETNASAA RASAKSRFES TKQRFFNHLL MGMKAPSIIR
AIEDDLATGH ACVIQVVSTG ESLLKRRLET MDAEDELVEG ALTPRDYVLS KALDNT
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