| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3988 |
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| Symbol | |
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| ID | 5714517 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | - |
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| Start bp | 48594 |
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| End bp | 50606 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641276901 |
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| Product | TRAG family protein |
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| Protein accession | YP_001542197 |
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| Protein GI | 159046527 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.420427 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGCGCCG CCATGGGAAA AGTCCGGATC GCCACGGGCG TCCTGCTCGT GACGCTGGTG
ACAGGGGCCA TGGGCTATAC CATCGCCTCG GCGGTGCTGA CCTACCAGGA CCTTGGCTTC
GGGGCCGAGA TCGACTTTGC CTATATCGCG CAGAACTATC TGGCGATCCT CGATCGCCGC
CCGGAGGACG CCCAACTCAT CCACCTGATC ATCGGTAGCT TCGCCGCCGC CGGTATGATG
CTGAGCCTCG CCCTGTCGGG GTCCGCGCTC ACACGCTTTG GCCAGACCCA TTGGCAGACC
TCCCGCGAGA TGAAGGCCAA TGGGTTCTTC GGCGCGCCCG GGACGGGATT CATCCTCGGT
AAACTTGGGG CGCCGGGCTC CCGCGCCAAC TACATCTGCT CGACGGTCTT TCCCCATGCG
CTGATCGTGG CCCCCACGGG TCGCGGCAAG ACCACGGGTT TTGTCATTCC GAACCTGCTC
ACCTGGCAAG GCTCTGCCGT GACGCTCGAT GTGAAGGGCG AGTGTTTCGA GGCCACGGCG
CGGCACCGCG CAGCCCAGGG CGACAAGGTC TATCGCTTTG CTCCCACGGA TTGGGAGAGC
AAGCGCACCC ATCGCTACAA CCCGCTCCTG CGCATCTATC AACTGAAAGA TCCTGCGCGC
CAGCAGATGG AACTGCAGCT CTTGGCGACG CTGTTCCTGC AGAGTGACAA CGACCGGGTG
CAGGGCCTCC TTAAGGGCGG GATCGATCTC TTCGTGGCGG CAGGGCTTTT GGCCTTCCAG
CGCAAGCGCC CGACCTTGGG CGAGATTTAC CGCATCGCTG CCTCGGGCGG GAACAAGCAG
AAGGAGTATT TTGCGCGCGG CCACGAGGTG GAGAACAGGG CCGCCAAGCT GATCTTCACG
CGTCTGGCCT CGACCAACAA CGACACGCTG ACCTCATACG TTTCGCTCCT GATGACCTCG
GGGCTCGATC AATGGCAGAA CCCTGCGATC GATGAGGCGA CGGCGGTGTC GGACTTTGAT
TTCCGGACGA TCCGCAAGAA GCCCTTTTCG GTCTACCTCG TGGTCCAGCC GCTGATGGTG
AAGCCGCTTG CGCCGCTGAT CCGGCTGTTT TTCTCCGATC TTCTCTCGGC CATGCAGGAA
AAGGACCCCG GGCCGGATGA GCCTTGGCCC GTGATGATCA TGCTCGATGA GTTCAATCGC
CTTGGCAAAA TGCCGATCGT AGTCGAGAGC ATCGAAACCC TGCGGACCTA TCGTGGCCAT
CTGGCCGTAG TGACACAAAC CATCCCCGCC CTCGATGAAA TCTACGGCGA GAACACCCGC
CGTGCGCTGC AGGGCAATGC CGGCGTGAAA CTGTACCTGA CGCCCTCGGA TGAGAAAACT
GTCGAGGAAC TGAGTAAGGC GGTTGGCAAG ACCACGAAGA CCGTGGTCAC GCGCTCCCAA
TCCATCGGCA AGAACCCCTT CGAAGGTCGC AGCCAGTCCA CAAGGACCGA AGAAAGCTCT
CTGCTCCCTG AAGATGAAGC GCGCCGCCTT CCGCTCGATG AGATCGTCAT GGTCATCGAT
GCCCAAATGC CGGTCCGTGC GAAGCGGATC CAGTATTTTG ACGATCGGCT GTTCAAGGCG
ATCCACGCGG CGCAGACCGG CGAGTTGCCG TTTCCGGAGC CGGGGGGAGG GGGGCCGCAA
GGCAATCTGT CGTTGAGTAT GCGCGCCATG CCGATGACGC CGCCACCGGA CGGCCCGCGT
GGATCTGAAG CAGATGTGGA GAGGGCACGC GAGGTCGTTG ACGGTCAACC GTCAGGGCAA
TCTGATGTAG TTCCAAAGAA GACCACGCCT GTCGTTCAAG CCGTTATCGC CGAGGAACAG
CGCCAGATGG AGATGGATTT TGGGGGACAG CTTGCGGATG TCGAGACAGT GGGGGTGGAT
GATGATGCGC AGATGCGCTC CGCCGTTGAT GGGTTGGACG AAATGGAAGC GATGCTGCAA
GAGGACGGTG GTGAAAGGCT GGTTGCTCGA TAG
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| Protein sequence | MSAAMGKVRI ATGVLLVTLV TGAMGYTIAS AVLTYQDLGF GAEIDFAYIA QNYLAILDRR
PEDAQLIHLI IGSFAAAGMM LSLALSGSAL TRFGQTHWQT SREMKANGFF GAPGTGFILG
KLGAPGSRAN YICSTVFPHA LIVAPTGRGK TTGFVIPNLL TWQGSAVTLD VKGECFEATA
RHRAAQGDKV YRFAPTDWES KRTHRYNPLL RIYQLKDPAR QQMELQLLAT LFLQSDNDRV
QGLLKGGIDL FVAAGLLAFQ RKRPTLGEIY RIAASGGNKQ KEYFARGHEV ENRAAKLIFT
RLASTNNDTL TSYVSLLMTS GLDQWQNPAI DEATAVSDFD FRTIRKKPFS VYLVVQPLMV
KPLAPLIRLF FSDLLSAMQE KDPGPDEPWP VMIMLDEFNR LGKMPIVVES IETLRTYRGH
LAVVTQTIPA LDEIYGENTR RALQGNAGVK LYLTPSDEKT VEELSKAVGK TTKTVVTRSQ
SIGKNPFEGR SQSTRTEESS LLPEDEARRL PLDEIVMVID AQMPVRAKRI QYFDDRLFKA
IHAAQTGELP FPEPGGGGPQ GNLSLSMRAM PMTPPPDGPR GSEADVERAR EVVDGQPSGQ
SDVVPKKTTP VVQAVIAEEQ RQMEMDFGGQ LADVETVGVD DDAQMRSAVD GLDEMEAMLQ
EDGGERLVAR
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