| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3983 |
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| Symbol | |
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| ID | 5714512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | + |
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| Start bp | 41929 |
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| End bp | 42915 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641276896 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001542192 |
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| Protein GI | 159046522 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCTGA GCTATCTCGA AACCTCCCTC GACCGGATCG AAGCCGCCGC CCGCGACGAT
GTCATCGAGA TCTGCATCAA CCCCGACGGG ACCTGCTGGG GCGAATTCCA GGGCGATCAC
TTCATGCGCG CGCTGGATCA AAGGCTGACG GGCGTTCAGG TCAGGGACCT CGGCAACCAG
ATCGCCTCCT CGGCCAATAC CACGATGAGC AAGGACCGCC CCATCGTCTC GGTATCGATC
ACCTACAAGG GTCGCCCGAT CCGGGCACAG GTCATCACCC CGCCCGCCGT GCTCTCGGCC
ATGTCGATCA GCTTGCGGTT CTTCTCGAGC CTGCCGCTCG AGGGCATTGC GCTCGACTTT
CTCTTTGGCA AAGAGCGCAA GCTCGAAGAC CTGCGCGTCG AAAAAAAGCG CGCCTTGCGC
GCCGTGGTGG CCGCGGGTTT GATCGATGAT GCGCTGGCCT TCTGCGTCGA GAACAAACTC
AACATGATCG TCTCGGGTGG CACCTCCACC GGCAAGACCG TCGCCGCGCG CAAGATCCTC
TCTCACGTAC CGGCCGAGGA ACGCATCGTC ACCATCGAAG AAGCGGCCGA GCTGCTGCCG
ACCCAGCCAA ATGCAGTGAC CCTCATCGCC AATCGCGACG CGGAATTCCA GACCGCCGAT
GTGCTTCTCA CCGCCACGCT GCGCATGCGC CCCGACCGGA TCATCCTGGG CGAAGTGCGC
GGCAAGGAGG CCATGACCTT TCTGGAAGCC ATCAACACCG GCCACGGCGG GTCCATGACC
ACGCTGCATG CCGAAACACC GCAACTGGCC GTGCAGCGGC TTGCGATCGC AGCACTGAAA
ACCGAGATCC CGATGACCTA TGCCGACATG ATCCAGTACA TCGAAAATTC CATCGATGTG
ATCATCCAGG CCGGTCGCCA TGACGGAAAA CGCGGCATCA CGGAATTCTA CCTCCCCGGA
GCAACTGAGA TTGGAATTTC CCCATGA
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| Protein sequence | MSLSYLETSL DRIEAAARDD VIEICINPDG TCWGEFQGDH FMRALDQRLT GVQVRDLGNQ
IASSANTTMS KDRPIVSVSI TYKGRPIRAQ VITPPAVLSA MSISLRFFSS LPLEGIALDF
LFGKERKLED LRVEKKRALR AVVAAGLIDD ALAFCVENKL NMIVSGGTST GKTVAARKIL
SHVPAEERIV TIEEAAELLP TQPNAVTLIA NRDAEFQTAD VLLTATLRMR PDRIILGEVR
GKEAMTFLEA INTGHGGSMT TLHAETPQLA VQRLAIAALK TEIPMTYADM IQYIENSIDV
IIQAGRHDGK RGITEFYLPG ATEIGISP
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