| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3980 |
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| Symbol | |
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| ID | 5714509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | + |
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| Start bp | 39197 |
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| End bp | 39850 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641276893 |
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| Product | VirB8 family protein |
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| Protein accession | YP_001542189 |
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| Protein GI | 159046519 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3736] Type IV secretory pathway, component VirB8 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.505603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGAGTG AACAAGAGAT CATCGAGGAA GAACTGGTCT ACGGTGCCTT GCGCCGCGAA
CGGCTCTGGC AACGCCTTGG TCTGGCAGGT CTTGTCTTCG GCATCATCGG CTGTCTGAGT
GCCGCGGCTG TCTCGATCCT CGATGTCGAT CCGCCCCCCG TCGTTGTCCC CTATGATCCC
GCTACCGGCT TTGCACTCCC CGAGGCCTCG GTGGGCGCTT CCTCGGTGAC CGCCAACCAG
GCGATCATCG AGGCGGAGGT CTTCCGCTAT GTGACCGACC GGGAGATCTA CAATCAGCTC
GATAACGATC TGCGCATCCG CAGCGTCCTG CGCCGCTCGG ACGGGGCCGC CGAGAGCAGG
CTGCGCCAGA TATGGAACAG CGCAAATGAA AACTATCCAC CGACCGTCTA TGGCCCCAAT
GCCCGGCTCG ACGTGGAAAT TCTCAGCATC AACCGGATCG GATCCAACCG CGCCACCGTG
CGCTTGCGCA AGCGGCTGAC CTCCATCAAC GGCACCCAGA CCGGGCTCTT CACCGCCACG
CTTCTCTTCG AGTTCCGTCC CGAAACCCGT CGCTCCATCG ACGAGGTCTG GACCAATCCG
TTTGGGTTTA CCGTGCTCGA ATATTCCATC CGCTCCGACA GATTGGAGAA CTGA
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| Protein sequence | MASEQEIIEE ELVYGALRRE RLWQRLGLAG LVFGIIGCLS AAAVSILDVD PPPVVVPYDP
ATGFALPEAS VGASSVTANQ AIIEAEVFRY VTDREIYNQL DNDLRIRSVL RRSDGAAESR
LRQIWNSANE NYPPTVYGPN ARLDVEILSI NRIGSNRATV RLRKRLTSIN GTQTGLFTAT
LLFEFRPETR RSIDEVWTNP FGFTVLEYSI RSDRLEN
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