| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3976 |
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| Symbol | |
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| ID | 5714505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | + |
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| Start bp | 34700 |
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| End bp | 37063 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641276889 |
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| Product | CagE TrbE VirB component of type IV transporter system |
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| Protein accession | YP_001542185 |
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| Protein GI | 159046515 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCGTG AAGCCGCGCT TGATCTCCGC ACGATGACGC CGGAGTGGTA TGCGCGCGAG
ACCCGCCTCG CGCACATGCT GCCCTATGTG AGCCTCGTCG ATCACCAGAC CGTGCGGACC
CGGGTCAACG AGCTTTTCCA GTGCATCCGG CTCGACGGGG TCAATAGCTA TACGACCGAT
GACGCCTATC TCGACAAGGT GACCGCGCTC TTTGCCCGGA TCATTGCGCA ATTGGGGCCG
GAGTTCAGCT ATTACGTCCA TAAGGTCTCG AAGGCGATCA CGCCGGACCT CGAGCCGCTG
CGCGAGGACA GTTTCGCGGG AGAAGTCGAC CGGCTCTGGC GCAAGAAGCT AGAGACCAGC
GGGCTGCGCG ACAAGACGCT CACCCTTACG ATCATCCATC GCCCGCCTCC AAAAAGCGTC
CTGCCATTCC TGAACCGCAG CGCGCCGGAT CGCCTCAAGG AAGCGACCGA GAAGCGCCTT
CGCCGATTGG GCGAGGCCGT GAACGTGTTC CTGTCTGGCC TGACGGAGCT TAACCCACGT
GTGCTTTCGG CCAAGTCCGG CGAGTTGATT GGCTTCCTAG GGGCCCTCAA CACTGGCCAG
GAACTGCCGC TCTATCCGGC GAACACCTAT GGCTTCCTGT CCTTCAACGT CGCCAACACG
CGAGTGACGT TTCAAGGCGA TCATTTCGAG CTCTCGGAAG GCGTCGTGGG CCATCGCTAC
GGCAAGAGTT TCACCATCGG GGAATACTCG GAAGGCACCT CCTGCACCAT GTTCGACATG
CTGAACCTGC CGGTCGACAT GATCGTCACC CATTCCTTCA CACCGATCAA TTCGAACCTC
ATGGCGGGCC GCATCAAGCG GCAAAAGCGC CAGATGCAGG CGAGCCAGGA CGCGGCCCTC
TCGCTCCTGG AAGCGCTCGA CATCGCCGCC GATGATCTCG AGGCCAAGCG CCAAAGCTTC
GGCGAGCATC ACATGGTCGT GACGCTCTTC TGCGAAACGC TGGACGAGCT GCAGACGCTC
AGCGCCGAAA TCGTGAACGC CGCCGCGACC GAAGGCGTGA AGATGATCGG TGAGCGGGTC
GCCGCAAAGG CCCATTACCT CAGCCAGCAT CCCGGCAACC AGCCCAAGCG CGTGCGTGCC
AGCGCCGTCA CCAATCGCAA CTTCGCGGAT TTTGCGGCCT TTCACCGGAC ACAGCTCGGC
AAACCCGCAG CACTTACCCC TTGGGGCCGG GTCGTCACAT ATTTGCCTAC GCCCGAGCAA
AGCGCCTATC GGTTTTCCTA TCACGAGCAA GGCTCGCCCG ACAAAGAACC GACCAGCGGC
CATACCCTGA TCATGGGACG ACCCGGGTCG GGCAAATCGG TGCTGTCGGC CTTCCTGATG
ACCCAAGCCC GTCGAGCAGG GGCGCGGATC TTCGTCTTCG ATTACCGTCT TGGTATGGAG
ATGGCGGTCC GCGCGAATGG CGGGCGCTAC GCGTCCCTGA ACGCAGGCCA GCCCACGGGT
CTCAATCCGC TCTGGACCGA AACCGATGCG CGGGGGACCG CCTGGCTCTC GGACTGGCTT
GCCACGCTTC TCTACCGCGC CGACAAGCCC CTGACGCCCG CACAGACCAA CCGCATCCAG
GAAGTCGTGC GCCAGAATGC CCAGGCCTCC AATCCGGCCC TGCGGAACTG GCGGGATTTC
GCATCGCTTT TTGTGTCCAC CGATGATGGC GGCGATCTGC ACCAGCGCCT GCTCGAATGG
TCTGAGGACG GCCGCTATGG CTGGATCTTC GGGCAGAGCC TCGAGGACAC CTTCTCGCTC
AAAGGCGATG TCGTGGGCTT CGATCTGACC GGCATTCTCG ACAGCGAGGC CGACAAGGAG
CGGATGGCGG TTCTCTCCTA TCTTTTCCGC CGGGTCGAAC GCGAGATCGA GGATCGCCGC
CCCACCATCA TCGTGATCGA CGAGGCCTGG AAGGCCCTCG ATAACGCGTA TTTCGCCGAG
CGGCTGTCGA ACTGGCTGGT GACCGCGCGC AAGCAGAACA CCGTCGCGGT GATGATGACG
CAATACGCGA GCCAGCTCGA GCGCACCCGG ACCGGCAAGA CCATCGTCGA GGCCGTGCCG
ACGCAGATCC TGCTGCCCAA TATCCGCGCG CAGCCTGCGG ATTACGCCAT GCTGAACCTC
ACGGAGAAGG AACTCGACGT CCTTCTCAAC ACGGGCAGCA ACAGCCGCCT GGCGCTGATC
CGCGACGATC AGGGCTCGAT CGTCGTCGAT GCCGATCTGA GCGCCCTTGG TCCCACGCTC
ACCATCCTCG GCGGCATGGA GAAAGGCGAG GCGCTCGTCG GCGCCGATTA CCGCGACCGC
CCAGACTTCT GGAGGCTTTC ATGA
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| Protein sequence | MPREAALDLR TMTPEWYARE TRLAHMLPYV SLVDHQTVRT RVNELFQCIR LDGVNSYTTD
DAYLDKVTAL FARIIAQLGP EFSYYVHKVS KAITPDLEPL REDSFAGEVD RLWRKKLETS
GLRDKTLTLT IIHRPPPKSV LPFLNRSAPD RLKEATEKRL RRLGEAVNVF LSGLTELNPR
VLSAKSGELI GFLGALNTGQ ELPLYPANTY GFLSFNVANT RVTFQGDHFE LSEGVVGHRY
GKSFTIGEYS EGTSCTMFDM LNLPVDMIVT HSFTPINSNL MAGRIKRQKR QMQASQDAAL
SLLEALDIAA DDLEAKRQSF GEHHMVVTLF CETLDELQTL SAEIVNAAAT EGVKMIGERV
AAKAHYLSQH PGNQPKRVRA SAVTNRNFAD FAAFHRTQLG KPAALTPWGR VVTYLPTPEQ
SAYRFSYHEQ GSPDKEPTSG HTLIMGRPGS GKSVLSAFLM TQARRAGARI FVFDYRLGME
MAVRANGGRY ASLNAGQPTG LNPLWTETDA RGTAWLSDWL ATLLYRADKP LTPAQTNRIQ
EVVRQNAQAS NPALRNWRDF ASLFVSTDDG GDLHQRLLEW SEDGRYGWIF GQSLEDTFSL
KGDVVGFDLT GILDSEADKE RMAVLSYLFR RVEREIEDRR PTIIVIDEAW KALDNAYFAE
RLSNWLVTAR KQNTVAVMMT QYASQLERTR TGKTIVEAVP TQILLPNIRA QPADYAMLNL
TEKELDVLLN TGSNSRLALI RDDQGSIVVD ADLSALGPTL TILGGMEKGE ALVGADYRDR
PDFWRLS
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