| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3973 |
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| Symbol | |
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| ID | 5714502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009957 |
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| Strand | + |
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| Start bp | 33535 |
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| End bp | 34149 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641276886 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001542182 |
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| Protein GI | 159046512 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCTGG TCATGGAGAG CGATGGCTCT CTGACCCCGT CCCGCTCCCA GAACAGCTTT
GCCCGCAATT ACAATGATGG CATTGGACAG GGGTCGGCGG CTGATGGGCT GGCGATACTC
GGTGAGACTG ACCTTGGGCC AGACGAAGTT CAGGTTGCTG CCCTTGCGCG GCCTGCTCCC
CTACCCCGCG CTGAAGTTCT AAATGCCATA GAAGCCACCG CCCTTCGCTA TGCCGGGCAC
CCTGCGCTGC GCCGCGCAGA CCTCTCGGTT CGTGATTGGC TGACGCTCTA CCGTGCCAAT
ATCGAAGTCG AGAGCGCCTA TCGGCAGGAT GCGGTCTCGA GTGCTGGCGC CATTGGCCTT
GGTCAATTGA TGCCCGCGAC GGCGCGCGAT CTTGGCGTCG ATCCGCGTGA TCCCCTTCAA
AACCTCGACG GCTCCGCCCG CTATCTTGCG ATGATGCTGA ACACGTTTGG CGATCCGCGT
CTTGCCCTCG CGGCCTACAA CGCCGGGCCG GACGCTGTGC GCCAGTACGG CGGCATTCCC
CCCTACAGAG AAACCCAGAA CCACGTGGCC CGTGTCATGG CCGTCGTGGC CCGATTGGAA
GGATCAAATT CATGA
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| Protein sequence | MVLVMESDGS LTPSRSQNSF ARNYNDGIGQ GSAADGLAIL GETDLGPDEV QVAALARPAP
LPRAEVLNAI EATALRYAGH PALRRADLSV RDWLTLYRAN IEVESAYRQD AVSSAGAIGL
GQLMPATARD LGVDPRDPLQ NLDGSARYLA MMLNTFGDPR LALAAYNAGP DAVRQYGGIP
PYRETQNHVA RVMAVVARLE GSNS
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