Gene Dshi_3962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3962 
Symbol 
ID5714491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009957 
Strand+ 
Start bp26692 
End bp27312 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content62% 
IMG OID641276875 
Productcation efflux protein 
Protein accessionYP_001542171 
Protein GI159046501 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1230] Co/Zn/Cd efflux system component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.0859119 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGAGC AGAGAAACGC AACGGAAAGA CGCACACTCT GGATCGTGCT GGGTCTCAAC 
ATCGGGCTGG CAGTCGCTTT CTTCGCCTCG GGCGCATTCG GCGAGTCAAG CGCGCTTATC 
GCCAATGGCC TCGACAATCT GTCGGACAGT TTCGTCTACG CGATCAGCCT CTTCGCGCTG 
TCCCGCTCCG CCAAGTGGAA GCGCGGAGCG GCGAACGTTT CGGGCGGCCT GCTGATCCTC 
TTCGCCCTTG GAATCCTGTA TGACGCGTGG CGCCGCTACG TCGGCGGATC GGATCCTCTT 
GGCACGATCA TGATTGTCAT GGCGCTGGTA GCGGCGGCCA TCAACGCACT TTGCGTCTGG 
CTGCTGGCAC GGCTTCGCGA TCCAGACGTA AACATCCGAG CGGCGAATAC GTTCAGCTGG 
AACGACTTCG CGGCCAATCT CGGAATCGTC GTCGCAGGCG GGCTCGTAGC CTGGCTCGGA 
ACGAATTGGC CGGACCTTGT CGTGGGCGTG ATTGTCGCCG GCATCGCGGC CTGGGGTGGC 
GTCGGAATCC TGAGAGACGC GCATGGTGAA CACCACAAGG CGGTGCACAA TGACGATCAG 
GTAACCAAGG ACTCGGCCTG A
 
Protein sequence
MAEQRNATER RTLWIVLGLN IGLAVAFFAS GAFGESSALI ANGLDNLSDS FVYAISLFAL 
SRSAKWKRGA ANVSGGLLIL FALGILYDAW RRYVGGSDPL GTIMIVMALV AAAINALCVW 
LLARLRDPDV NIRAANTFSW NDFAANLGIV VAGGLVAWLG TNWPDLVVGV IVAGIAAWGG 
VGILRDAHGE HHKAVHNDDQ VTKDSA