| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3944 |
|---|
| Symbol | |
|---|
| ID | 5714473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009957 |
|---|
| Strand | + |
|---|
| Start bp | 12980 |
|---|
| End bp | 13702 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641276857 |
|---|
| Product | cytochrome c biogenesis protein transmembrane region |
|---|
| Protein accession | YP_001542153 |
|---|
| Protein GI | 159046483 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0785] Cytochrome c biogenesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCGCGCG CCCTCACCGC CGCCCTCCTA GCCGGCACGA TATCATTTCT GTCCCCCTGC
GTGCTACCTC TTGTGCCAGG TTATGTCTCC TACGTAACCG GGCGCACAGC CGCTGAGGGC
GGGGTGGTCG GCGCTTCGCC GTCGCGCGCG GTCTGGCTGA GCCTGTGTTT TGTCCTCGGC
TTCTCCACCA TCTTCATGGG ACTTGGCGCA TCCGCGACTG CAATGGGTCA GGCCCTGCTT
CGGTGGCGGT ATGAACTCAA CCTCGTTGGG GGCGGCATCA TCATTTTCTT CGGGCTCTTC
ATGATAGGAG CCGCGCGTGT TTCGGTCATG GAACGCGACT TCCGATTCAA TCTCAACATC
CCCGGGGGCC AACCCGCTGC GTCCTATGTC CTCGGTCTTG CCTTCGGTTT CGGCTGGACT
CCGTGCATCG GCCCGATCCT CGGCGCGATC CTGACAGCCA GTGCGGCGAG TGCCACGATG
GGCGAAGGTA TCATGCTGCT TGCCGTCTAT TCCGCCGGCC TTGGAATACC GTTTCTGATC
GTGGCCGGAT TCACCGACCA GATCGCGGGA CGGTTGCGGG CCATCGGCCG GGTTGGCCGC
CGCCTCCACC AGCTTGCGGG CATAGTGATG ATCTTGATGG GGCTGGCGAT GATGACAGGG
CAGTTGAGCG CGCTGTCATA CTGGATGCTC GACGTATTTC CGGTTCTGGG ACGGATCGGA
TAG
|
|---|
| Protein sequence | MARALTAALL AGTISFLSPC VLPLVPGYVS YVTGRTAAEG GVVGASPSRA VWLSLCFVLG
FSTIFMGLGA SATAMGQALL RWRYELNLVG GGIIIFFGLF MIGAARVSVM ERDFRFNLNI
PGGQPAASYV LGLAFGFGWT PCIGPILGAI LTASAASATM GEGIMLLAVY SAGLGIPFLI
VAGFTDQIAG RLRAIGRVGR RLHQLAGIVM ILMGLAMMTG QLSALSYWML DVFPVLGRIG
|
|---|
| |