Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3942 |
Symbol | |
ID | 5714471 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009957 |
Strand | + |
Start bp | 10774 |
End bp | 12111 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641276855 |
Product | amino acid permease-associated region |
Protein accession | YP_001542151 |
Protein GI | 159046481 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0531] Amino acid transporters |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGAGCG AAAAAGAAAC GTACCGCGAA AATTCCATCA GTCTGGGCGG AGCCGTTGCG ATGGGGACAG GCGTGATGAT CGGCGCTGGA ATCTTTGCGT TGACGGGGCA AATCGCGCAG CTCGCCGGCC CGCTTTTCCC GCTTGCATTC ATCGCCGGCG CGGTCGTCAC AAGCTTCAGC GCCTACAGCT ACATCAGGAT GTCGAACAAA TGGCCGTCCT CGGGTGGCAT CGCCATGATC CTGCAGAAAT GCTATGGCCC CGGAGCCATC GCGGGCGGGG CCGCACTGCT GATGGCGCTC AGCATGGTGA TCGCGGAAAG CCTCGTCGCG CGAACCTTCG CCACCTATGT CCTGCGCCCT TTCGATATCG AAGGTGGCCC ATTGGTCCCC GCTCTGGCTG TGGCCGTGAT CGTTTTCGCC TTTTTGGTGA ACATGGCCGG AAACCGCTCG GTCGGGCTGT TCTCGTTGAT CATGGCCGCG ATCAAGATCG GAGGCATAGC TCTGTTTGGC ATCGCGGCCC TGTGGTCCAG TGGTTTTGCG TTCGCCGCGG CGTCCGAGAC CTCACAATCC TACGGGCTCA CGGGGTTCAT CGCCTCTACG GCGCTGGCCA TCCTTGCGTT CAAGGGATTC ACCACGATCA CCAACAGCGG AGCCGAGATC ACTGAACCAA ATCGCAATGT TGGCCGAGCG ATCATGTTCT CTATCGGAAT CTGCGTCGTC GTCTACCTGT TGGTCGCCTA CGGGGTCGGT TCGAGTCTCA CGATCGAGGA GATCATCTCA GCGCGTGACT ATTCGCTGGC ACAAGCGGCG CAGCCCGCCC TTGGACAAAC CGGCTTCATA CTCACGGTGA TCCTGGCCGC TGTCGCAACG GCGTCCGGCG TTCTGGCCAG CGTCTTCGCG GTGTCGCGTA TGCTGGCGAT GCTGACCGAC ATGGAAATGA TCCCGCACAG CCACTTCGGT ATGCCAGGTC CCATCCAACG CCACACCCTG GTCTATACTG TCGTCATCGC CGCGACGTTG GCCGTGCTCT TTGATTTAGG CCGGATCGCA TCCCTCGGTG CTTTCTTTTA CCTCGTCATG GACATGATCA TACATTGGGG CGTGTTCCGC TATCGTCGAG CAGACGTCGG CGCCTTCGGT ATCGTGCTTT TGACTGCCCT GGCGCTCGAT GCGATAGTAC TGGCAGCTTT CACCGTGATG AAGCTTCAAA GCGACCCGAT GATCGTTCTC TACGCCGCTG TCGGGATGAT CGCTGTGTTC GCCTTCGAGC GCGTTTACTT GTCGCAATGG GTGGCACCGC AAGTCGCCCC CGCCCCCGCC CACGCCCACG GTGATTAG
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Protein sequence | MQSEKETYRE NSISLGGAVA MGTGVMIGAG IFALTGQIAQ LAGPLFPLAF IAGAVVTSFS AYSYIRMSNK WPSSGGIAMI LQKCYGPGAI AGGAALLMAL SMVIAESLVA RTFATYVLRP FDIEGGPLVP ALAVAVIVFA FLVNMAGNRS VGLFSLIMAA IKIGGIALFG IAALWSSGFA FAAASETSQS YGLTGFIAST ALAILAFKGF TTITNSGAEI TEPNRNVGRA IMFSIGICVV VYLLVAYGVG SSLTIEEIIS ARDYSLAQAA QPALGQTGFI LTVILAAVAT ASGVLASVFA VSRMLAMLTD MEMIPHSHFG MPGPIQRHTL VYTVVIAATL AVLFDLGRIA SLGAFFYLVM DMIIHWGVFR YRRADVGAFG IVLLTALALD AIVLAAFTVM KLQSDPMIVL YAAVGMIAVF AFERVYLSQW VAPQVAPAPA HAHGD
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