| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3904 |
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| Symbol | |
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| ID | 5714433 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 130573 |
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| End bp | 132153 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641276817 |
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| Product | SSS family solute/sodium (Na+) symporter |
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| Protein accession | YP_001542113 |
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| Protein GI | 159046442 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4146] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.757586 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACAGC AGATCGACGC CAATCTCACG ATGCTCGATT ACGGAGTGAT TGCCGTCTAT
CTGGCGATCG TGATCGCCAT CGGGGTCTGG GTCGCGCGCA AGACCCGGAC GGGAGAGGAT
CTGTTTCTGG CCGGCCGGTC ACTGGGTTGG GCGGCGATCG GGTTTTCGCT CTTCGCCTCC
AACATATCCA CCTCGACCCT CGTCGGCCTG ACCGGCAGCG CTTACACAGG TGGCCTGACG
GTCTCTTCCT ATGAATGGAT GGCCGGGATC CCGCTGCTGT TCATGGCGTT CATCTTCGCG
CCGGTGTTCC TGAAATCGCG CATCTCGACC ACGCCGGAAT ACCTCGAAAA TCGCTATTCC
CGCCGCGTGC GCCTGTATTT CTCGGGCCTG ACTATCGTCT TTACCGTGAT CGTCGATACC
GCTGGCGGGC TTTATGCGGG TGCCGTCGTG CTCAAGGTCT TCTTCCCCGA TCTCGACATC
TGGATGTCTT GTGTGGCGAT TGGCCTCTTC GCGGGCATAT ACACGGCAAC CGGCGGCCTG
CGCGCCGTGG TCTATACCGA TATCCTGCAG GCGGTGGTGC TGATCTGCGG CACTGGCCTG
ACTGCGTTCC TGATGTACCA GTCTGTCGAT TTCTCGTGGG AGTCGGTGCG CAGCCAGGTC
CCCGAGGGCC ATCTGAGCAT CGTGCAGCCC ATCGACGACG ACACCCTGCC CTGGCCGGGG
CTGTTCACCG GTGTCTGGCT GCTGGGCTTT TGGTACTGGG TCACCAACCA GTACATCGTG
CAGCGCGTTC TGGGCGCGAA GGATCTGAGC AATGCGCAGT GGGGCGCCAT CCTGGGCGGT
ATCCTCAAGA TCCTGCCGAC CTTCTTCATC ATCCTGCCCG GGGTCATGGC GCTGGTCACA
CTGCCAGATA TCCAGAACTC GGACCAGGTG TTCCCGATCA TCATCACCGA GGTGCTGCCT
TCGGGCCTGA CCGGGCTTGT CATGGCCGGG TTGATCGCGG CGATCATGTC CACCGTGGAC
TCGACCCTGA ACTCGTCCTC AACCCTCTTG ATCAACGATT TCCTGACGAG GCCCGAAAAA
GAGCCCGACC CCGAGACGGC GAAGAAATGG GGCATGATGG CGACCCTTGG CTTCATGGTG
ATCGCCATCG CCTGGGCGCC GCTGATCCAG TATTTCGGCG GCCTCTGGGC CTACATCCAA
CAGGCCTTCT CGGTGCTGGT CCCGCCGCTT GTGGTGTGCT TCACACTCGG CGCCCTGTGG
TCCCGCGGCA CCGAAAACGC AGCCTTCTGG ACGCTGATCA TCGGCCATAC CCTCGGCCTC
GTGGTCTTCA TGCTGAACCA GTTCGGTATC TGGCCTCTGC ATTACACGAT CAGCGTCACT
ATCATGACCG CCGTCTCCGC CGCGATCTTC GTCGCGCTCA GTCTGCGGGA CGACACACCG
GATGTGCGCG AGGATGCGCT CTGGCAGCGG GCGGACGCCT TCGACACCCC CGCAACCACT
GCACCGGTGC TCAAGAACGT GAAGACCCAT GCGATCCTCC TGATCCTGCT GATGATCGGC
ACGCTGGTGC TGTTTTGGTG A
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| Protein sequence | MEQQIDANLT MLDYGVIAVY LAIVIAIGVW VARKTRTGED LFLAGRSLGW AAIGFSLFAS
NISTSTLVGL TGSAYTGGLT VSSYEWMAGI PLLFMAFIFA PVFLKSRIST TPEYLENRYS
RRVRLYFSGL TIVFTVIVDT AGGLYAGAVV LKVFFPDLDI WMSCVAIGLF AGIYTATGGL
RAVVYTDILQ AVVLICGTGL TAFLMYQSVD FSWESVRSQV PEGHLSIVQP IDDDTLPWPG
LFTGVWLLGF WYWVTNQYIV QRVLGAKDLS NAQWGAILGG ILKILPTFFI ILPGVMALVT
LPDIQNSDQV FPIIITEVLP SGLTGLVMAG LIAAIMSTVD STLNSSSTLL INDFLTRPEK
EPDPETAKKW GMMATLGFMV IAIAWAPLIQ YFGGLWAYIQ QAFSVLVPPL VVCFTLGALW
SRGTENAAFW TLIIGHTLGL VVFMLNQFGI WPLHYTISVT IMTAVSAAIF VALSLRDDTP
DVREDALWQR ADAFDTPATT APVLKNVKTH AILLILLMIG TLVLFW
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