| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3900 |
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| Symbol | |
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| ID | 5714429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 124299 |
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| End bp | 125282 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641276813 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001542109 |
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| Protein GI | 159046438 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.155231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAGT CGAAAATCGC CGTCGTCGCG GGCGGTAGCG CCGGCGTCGG TCGGGCCACC
GTCGAGAAAC TGATTGCCGA AGGCTACAAG GTCGGCGTGC TGGCAAGGGG CGAGGACCGG
CTGGCCGAGA TGGAGGAAAC CTACGGCCCA CAGGTCATGA CCCTGCCCTG CGATGTCAGC
GACGCCGCCC AGGTGTCCCG CGCCGCCACC TTGATCGAGG AAGGGCTCGG GCCGATCGAC
CTGTGGATCA ACTGCGCGAT GCTGACCAGT TTTTCGCCCT TCACCGAGAT GAAGGATGAC
GAATTCCGCG CCATCGTCGA CACCACTTTC ATGGGTGTCG TAAACGGCAC GCGCGCCGCA
CTGGCGCAGA TGGAGCCGCG CGGGCGGGGT CAGATCGTGA CCTTGGGCTC GGGACTGGGG
TACCGGGCGG TGCCGTTCCA ATCGGCTTAC TGCGCCTCGA AACATGCGAT CAACGGCTTC
GTCGCCTCAG TGCGGTCCGA ACTGATCCGC AAGAATGCCG GGATCACCAT GAGCCTCGTG
CAACTGCCCG CCCTCAACAC GCCGCAATTC GACTGGGCCC GCAACAGGTT GGAGACCAAG
CCGCAACCCG CGCCGCCGAT CTATCAGCCC GAGGTGGCCG CCGATGCGGT AATGAGGGCC
GTCCACAAAG GGTCGCGCGA GTTGTTTGTC GGGGCCTCCG TTCTGCAACT GGTCTTCGGC
AACATGCTCT TGCCGGACTA CCTCGACAAG AAAATGTCCA CCAGCGGCGC AGAAATGCAG
AAATCCGACC GCGACGCGCA GGGAACCTCG GATGACAACC TGCACGGCCC GGTCGACAGC
ATCCCAGCCA GCGCGCACAG CAGCTATGGC GAAAGGGCAA AAGCCAGCGG CCTGATCGTA
GATGCCGATC TGGCCCGGCT CGCCGTGTTC GGCGGCCTGA TCGTTGGCAC CGCCGTGCTG
TCGCGGTTGC TACCGAGGCG CTGA
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| Protein sequence | MTQSKIAVVA GGSAGVGRAT VEKLIAEGYK VGVLARGEDR LAEMEETYGP QVMTLPCDVS
DAAQVSRAAT LIEEGLGPID LWINCAMLTS FSPFTEMKDD EFRAIVDTTF MGVVNGTRAA
LAQMEPRGRG QIVTLGSGLG YRAVPFQSAY CASKHAINGF VASVRSELIR KNAGITMSLV
QLPALNTPQF DWARNRLETK PQPAPPIYQP EVAADAVMRA VHKGSRELFV GASVLQLVFG
NMLLPDYLDK KMSTSGAEMQ KSDRDAQGTS DDNLHGPVDS IPASAHSSYG ERAKASGLIV
DADLARLAVF GGLIVGTAVL SRLLPRR
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