| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3891 |
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| Symbol | |
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| ID | 5714420 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 113801 |
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| End bp | 116362 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641276804 |
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| Product | cytochrome c oxidase subunit I type |
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| Protein accession | YP_001542100 |
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| Protein GI | 159046429 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.561544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.116226 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACA CCTTCCCCCA GCCACGGGGC GCCGAGCCGC CCAGCCCGCA GCCGGCGGCA
CGCAAGCCCG CCTATGACGT TGCCCCGAAG GGCGAGATGG GCAAGGATTT CGAAGGCATC
TGGGAACAGC CCTCCGGCAT TCGCGTCCTG TCCGCGGTCA GCCACCGGGC GGTGGGCAAG
CGTTTCCTGA TCACCGGGTT CATCTTTTTC CTGATCGCCG GGGTCTTCGC GCTCCTGGTG
CGCCTTCAGC TGATGGTGCC CGAGAACACC TTCCTAAGCA GCGAAACCTA CAATCAGCTG
TTCACCATGC ACGGGACCAT CATGATGTTC CTGTTCGCGA TCCCGATGCT AGAAGGGTTC
GCCGTCTATC TGATCCCGCT GATGATCGGC GCGCGGGACC TGGTGTTTCC ACGCCTCGGC
GCCTTCGGCT ATTACTGCTA CCTCTTCGGC GGCATCATCG TGCTGTCGTC CTTCCTGTTC
GACGCGGCCC CGGATGGCGG GTGGTTCATG TATGTGCCGC TGTCGACCTC GGCCTATACC
GAAGGGCTCA GCGCGGATTT CTGGCTGATC GGGATCACCC TGGCCGAGAT CGCAAGCGTC
ACCGCGGCGG TCGAGATCAT CGCCGCTATC CTGTGTTCCC GCGCGCCGGG CATGAGCCTG
ACCAAGATGC CGATCCTGAT GTGGTATCTC CTGGCCACCG CCTTCATGAT CGCGATTGCC
TTTCCGCCGC TGATCATCGG CTCGATCCTG CTGGAGGCAG AGCGCCTGCT GGGTCTGCCG
TTCTTCGACC ACACCTTGGG GGGCGATCCG CTCCTGTGGC AGCACCTGTT CTGGCTGTTC
GGCCACCCGG AGGTCTATAT CATCTTCCTG CCGGCGGCCG GCATGGTGGC CACGATGCTG
CCGACTTTCG TGGGCAAGCC GCTCTTCGGC TACGGCTTTG CCGTCGCGGC GGTGGTGACG
ATGTCCTTCC TAAGTTTCGG GCTCTGGGCG CATCACATGT TCGCAACCGG CCTGCCGATC
CTGTCGCTGT CGTTGTTCTC CGCCGCCTCG ACCATGGTCG CCGTGCCCAC CGGCGTGCAG
ATCTTCTGCT TCATCGCCAC GCTCAGCCAG GGCAAGCCGC GCCTGACCGT ACCGATGCAC
TTCATACTGG GCTTTCTGTT CATCTTCGTC CTGGGTGGCA TGACGGGCGT CATGGTGGCG
GCGGTGCCAT TCAACCTGCA AGCGCATGAC AGCTACTTCG TGGTGGCGCA TCTGCATTAC
GTGCTGATCG GCGGCATGGT GTTCCCGATG TTCGGCGCGC TGTACTACTG GGTGCCGCAT
TTCACCGGCC GCATGATGTC CGAGCGGTTG GGGAAATGGG TGTTCTGGCT CATGTTTTCC
GGCTTCAACC TGGCCTTCTT CATGATGCAC CTGACGGGGA TGCGGGGCAT GCCGCGGCGG
GTCGCGACCT ATCCCGGAGG CATCGGCTGG GACCGGCTGA ACATGCTGTC GACCATCGGC
GCCTTCATTC TGGCCGCCGG GATCGCGCTG TTCATCTGGG ATTTCTTCCG CCACCGGCGC
GTCGGGCCAC GGGCGGGGCG CAACCCATGG GGCGCAAGCA CGCTGGAATG GCTCTATGAA
CCGGTCACGC CCGGCTACAA CTTCCGCGCC ATTCCGCGCA TCACCTCGCG CGAGCCGCTT
TGGGATCAAC CGGAACTGGC CGAGACGCCC GGCGCAGAGG TGCGCGGCGC CCTGCGCGAC
TACCCGGATC ACCGGCGCGA AACACTGGGC TGCCACATCG TCACGGGCGA ACCGCTGCAG
ATACTGCGCC TGCCGCACCC GACATGGTTC CCGCTGATCG CGGCCTTGGG CCTTGCGCTG
CTCTTCGGCG CCACCCTCGC CTCGGTCTAC TGGCTCTGCG CGATCGGGGC GGGCATCGCG
CTGATCGGCT TCGCCGGCTG GGCATGGGAG CCTTCGGACA GCGGTGTCGA CCGAGACATC
GGCATCGAGG GACTGCGCCT GCCGGTCAAT GCGATCGACA AGCAAAGTCA CCTGCATGTG
GGTCTCGTCG GAACGATCAT GATCCTCTTT GCGCTGTTTT TCTCGCTGCT CTTCGCGGGG
CTCTACCTCT GGAACACGCA ACCGATCTTT GCCGAGGCGA CCCAGCGGCC CGCGCGCATC
TTCGCCCTTC TCGCGCTCGG CCTGTCGGTC GTGGTCTTCG CGCTTAGCTG GATGGTCGGA
CGGGCCCACG CGCGCGCATC GCTCTGGATG ACCGGAAGCC TCAATATCCT GCTGGCCGCC
TGCCTGATCG GGCTAACCAT GTGCTTTGGC CTTGCCCTCC TGCCCATCGA CCCCTGGAGC
ACGGCTTTCG CCGCCGTCGG ATGGGCGATC GGCGCCTATC TCACGGCCCT GATATCCGTG
GCGCTCTTGT GGACGGTGTT CAACGCCCTG CGCAAGGCCG TGGGCGCCAC CAAGCCCGGT
CAGGGCCTGC CCGACATGCT GCTTGGCAGC TTCGGCAAAG CCACCGCCAC CATGGCGCTG
ATCACCGCCA TCGCCTTCCT GTTCGCGGGG ACGCCACAAT GA
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| Protein sequence | MTDTFPQPRG AEPPSPQPAA RKPAYDVAPK GEMGKDFEGI WEQPSGIRVL SAVSHRAVGK
RFLITGFIFF LIAGVFALLV RLQLMVPENT FLSSETYNQL FTMHGTIMMF LFAIPMLEGF
AVYLIPLMIG ARDLVFPRLG AFGYYCYLFG GIIVLSSFLF DAAPDGGWFM YVPLSTSAYT
EGLSADFWLI GITLAEIASV TAAVEIIAAI LCSRAPGMSL TKMPILMWYL LATAFMIAIA
FPPLIIGSIL LEAERLLGLP FFDHTLGGDP LLWQHLFWLF GHPEVYIIFL PAAGMVATML
PTFVGKPLFG YGFAVAAVVT MSFLSFGLWA HHMFATGLPI LSLSLFSAAS TMVAVPTGVQ
IFCFIATLSQ GKPRLTVPMH FILGFLFIFV LGGMTGVMVA AVPFNLQAHD SYFVVAHLHY
VLIGGMVFPM FGALYYWVPH FTGRMMSERL GKWVFWLMFS GFNLAFFMMH LTGMRGMPRR
VATYPGGIGW DRLNMLSTIG AFILAAGIAL FIWDFFRHRR VGPRAGRNPW GASTLEWLYE
PVTPGYNFRA IPRITSREPL WDQPELAETP GAEVRGALRD YPDHRRETLG CHIVTGEPLQ
ILRLPHPTWF PLIAALGLAL LFGATLASVY WLCAIGAGIA LIGFAGWAWE PSDSGVDRDI
GIEGLRLPVN AIDKQSHLHV GLVGTIMILF ALFFSLLFAG LYLWNTQPIF AEATQRPARI
FALLALGLSV VVFALSWMVG RAHARASLWM TGSLNILLAA CLIGLTMCFG LALLPIDPWS
TAFAAVGWAI GAYLTALISV ALLWTVFNAL RKAVGATKPG QGLPDMLLGS FGKATATMAL
ITAIAFLFAG TPQ
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