Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3875 |
Symbol | |
ID | 5714404 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009956 |
Strand | - |
Start bp | 95558 |
End bp | 97051 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641276788 |
Product | integrase catalytic region |
Protein accession | YP_001542084 |
Protein GI | 159046413 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 0.936093 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATAATCC GGCGTCCGGT CACCGATCCC CTTACGGACA GTCTGACTGC GCTGCCCGAA GACCGACGCG CCGAGGCGTT GCGCCGGTTC AACATACTGC GCCAGCACCT GATCGACGAA GTCCCCCTGA CGGAAGTTGC CCGTGTCAGT GGTATCCCAC TGCGCACGCT GCAAAGGTGG ACGTCCCGAT ATCAGCGCTT TGGGCTTGCC GGACTTGCAA GAGCACCGCG ATCTGATGCC GGGCAACGGC GGCTATCATC TGAACTGGTC GAGCTGATTG AAGGGCTGGC CTTACACAAA CCCCGTCTCT CTACCGCCGC AATCCACCGG CGCATCATCC CGATTGTAAA ATCGCGTGAC TGGCCTGTCC CTTCTTATGC CACGATACAT TCAATCGTGA ATAGTCTTGA TCCCGCGCTT GTCACGCTCG CTCATGATGG CGCAGCCGCC TATCGTGACC GGTTCGAAAT GATTCATCGT CATCGGGCCG AAAGGCCGAA TGCTGTCTGG CAGACAGACC ACACACAACT CGATCTAATC ATCTTGGATA CCAATGGTGC GCCGGTGCGG CCGTGGCTTA CCATCGTGCT TGATGATCAT TCCCGTGCAG TGGCTGGGTA CGCCGTCTTT GTCGGCGCAC CTTCTGCTAT CCAGACCGCT CTTGCCCTGC GGCAAGCTAT CTGGCGAAAG GATACGCCTT CCTGGCCGAT TTGTGGCCTG CCGGATGTTT TATACACCGA TCACGGCAGC GACTTCACCA GCAAGCACCT TGAGCAGGTC GCAGCTGACC TGCGCATTGA GCTTGTGTTT TCCACGGTTG GCCGGCCACA GGGGCGTGGC AAGATCGAGC GGTTTTTCGG TACCATCAAC ACTGAGCTGT TGCCTGAGTT ACCGGGGGCT TTGTCGAACG GAAAACCAGC CTCCCCGCCA CGCCTGTCGC TCGGCGAGTT GGAGGTTGCC GTAAAGACTT TCGTCACCGC AGTGTACAAC GCGCGCAAGC ATAGCGAAAT CGATGTGCCA CCTAATGAGG CTTGGCGGGG TGACGGCTGG CTACCTCGTA TGCCGAACAG TCTGGAACAG CTCGATCTGC TACTGGTAAT GGCCTTAAAA ACCCGGCAGG TCCGCCGTGA CGGCATTCGG TTTCAGGGCT TGCTCTACAC CGATCCCACA CTTGCAGCCT ATGTCGGCAA AACGGTCAAC ATCCGCTATG ACCCGCGCGA CATTACCGAA CTGCGCGTGT TCCACCGCGA CCGGTTTTTG TGCCGCGCTG TCAGCGCCCA TCATGCGCAT CACACAATAT CACTCAAGGA TATCCAACAG GCCCGCACCG CCAGGCGGAA GGCTTTGCGC AACGAGATCA CGGTAAAATC CAGACAGATC ACCGAGTTTC TTCCCAAACC TGCGCCACCT CCAAGTCGTG AAAAGCAAAA TCCCGTATCG CCTGACGCCC CGCGCCAAAA GCTGGTCCTG TATAAAACGG ACAAGACGCC ATGA
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Protein sequence | MIIRRPVTDP LTDSLTALPE DRRAEALRRF NILRQHLIDE VPLTEVARVS GIPLRTLQRW TSRYQRFGLA GLARAPRSDA GQRRLSSELV ELIEGLALHK PRLSTAAIHR RIIPIVKSRD WPVPSYATIH SIVNSLDPAL VTLAHDGAAA YRDRFEMIHR HRAERPNAVW QTDHTQLDLI ILDTNGAPVR PWLTIVLDDH SRAVAGYAVF VGAPSAIQTA LALRQAIWRK DTPSWPICGL PDVLYTDHGS DFTSKHLEQV AADLRIELVF STVGRPQGRG KIERFFGTIN TELLPELPGA LSNGKPASPP RLSLGELEVA VKTFVTAVYN ARKHSEIDVP PNEAWRGDGW LPRMPNSLEQ LDLLLVMALK TRQVRRDGIR FQGLLYTDPT LAAYVGKTVN IRYDPRDITE LRVFHRDRFL CRAVSAHHAH HTISLKDIQQ ARTARRKALR NEITVKSRQI TEFLPKPAPP PSREKQNPVS PDAPRQKLVL YKTDKTP
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