| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3871 |
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| Symbol | |
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| ID | 5714400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | + |
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| Start bp | 84768 |
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| End bp | 88262 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641276784 |
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| Product | RTX toxins and related Ca2+-binding protein-like protein |
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| Protein accession | YP_001542080 |
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| Protein GI | 159046409 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.318671 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAAT TTTCCGAAAT TACCGCAGAC CACTTTGGTA TGATCTACAC AGGAAATATG
CCAAACCGCG TAAGTCTCGA AAACTTCATA GAAATCACGA ACTATACCGG GATTGAATCG
ATCCGATGGC CTGGAGGAAC CCTGTCAGAG ATCGGATTCA GGAATGCGGG CGATGAAAAT
TATTATGACC TGACAGCAGA CAATCTCCTG GAGAATCAAT CGGGTACTGG CGCAATCCCT
GCAGGGCTTT CCGAGATATT AAGCGTCGCT GTAGAAGAGG ATCTCGGAGT TTCAATAATC
ATTCCTACAC TTTGCTACAC TGATCCTATT AAGAATGGAA TGATGGAATC GCCCAATCTT
GACCTTGCAT TTCAAGAATA TTACGATTTC TTGGAGAAGC TCTTGGTAGA GAAGGCCTGG
GGCAAGGTTC CTGCGAATTT TACGCTTGAA ATCGGGAATG AGGCGTCTCT TCATTTTGGA
GAAAACCAAG ATAAGTATGG GCAAATAGCC AATACGTTCC TCGCGGCCTA TGACAAGATT
CTGGGCGACT ATGCGATGGA CGATCCAGTC GATATAGCGA TTCAAATGGG TATCAGTCAG
AACCAGAGCA TGAACCAGAT CGTGATTGCA CAGATCGATG ACGATTTCAG TCACCATATC
GATGCTGTCC GCAATCATGA GCTCAACAAG AACCACGGTC TTTCATGGGA CAAGGGGTGG
GCAGGGCTGA ACGATGCGTC CAAGCAATAT TTCGATGAAT GGCTTGAAAA GACCGGTAAG
GATGAGCGCA GTCTCGATCA TTATGTCTCT GCCTGGAATA CGGGAACACC AACCGTAAGG
GATCAAGACG GAAATGTGAA GGAGCCGGAT CCGATTGCCG ACGATTACGG CATGAAGGAA
CTGAGTGCAG TTGTTGAAAT GTTTGCGAAC TTCAGCCTTC TTGGGGTCGA TAAAGCCTCT
CATTGGGGTG TTGCCGTCTC AGAAGCTCAC CCGAACGAAA CATCTTCCGT GAACAGGGAC
GGATCTCTCA ATTACACGCC CAAAGCGGAA GTGATACGGC TTGTCCACGA GAGCCTGATC
GGAACGACGC TGTCCCATGA CATTACCAAA GATGCCGATG GCAACCAGAT CCGCGCAGGA
TATTTCAGGT CGGATATCGA TGGAGAAAAT GATCCAACGC CATATCGGGT TTTCCTCTTC
GAGGATGACA GTAAATACGT CATGTTCATT GCGGCAAATC GTTTCGAAAT GGCCGAGACC
GATGTCGAGA TGGAAGTTGA AATAATCCTG TCGGATTATA TCGGCGATCC GGATGTCATC
GGTTTTGCGT GGAGCGAGCA AATTACGGTC GATGATCCCG TCTTCAACTT TTCCGACACG
CTTGATGAAA CGTCCGTGCT TGCCACGCGG CACAGTATTC AACATTGGGA TGAGGGGTTT
ACGGTAAATC TGTCTCAGAA TTACGAACTC GTGCGAGTTA TCGCGTCAAA GCAATCTCCT
GGTAAAGGAA ATCTCCATCT TTGGGGAAGT GACGCAGGTG ATGCTCTTCA AGGCGGGGGT
GGAAGCGACA CCCTGGAGGG CAACGCCGGA ACGGACATGT TGTTTGGCGC AAATGGCGGT
GACATTCTGC GCGGCGGCGC AGGCGACGAC ACGCTGTTGG GTGAGGCTGG CGACGATGAT
CTGCAGGGTG GGGATGGCGC AGATATCCTC CACGACGGTG ACGGTCGGGA CGATTTGCGT
GGTGGCACCG GCGCGGATCT GTTCGTGCTG GCTGCCGATG GTCTGGAAGA CGTGATTTGG
GATTTCAACC CCGAAGAGGA CCAGCTTGAT CTATCTGCAT GGACGACATT GCGAGCGACG
TCGCAAATTA CTTTCGAAGC AACTTCCACG GGTGCGCGTT TGCTCCATGG CAACGAGGTG
CTGATACTCC ACAGCTCCGG CGGCACGTCC TTGGATCGCA CGTTCCTGCC GAGCATTTGG
CTGCTGAATT CCCGGGAAGT GCCATTGCCC GACACAGTGC CTGCAGTATT CGAACAGGCA
GGAGCCCCAA TGCCGCGCGC ATTCCAAGCC AACGCGGTTC ATGGCAACGA CCATTACAAC
ATCACGGGCA ATGGCACGGA TGAGAATGTG CGCGCCGGAG CCGGGCGTAA CCTGCTGGTC
GATGGGGCGG GCGCGGACCG GATGGTTGGA AGCGCGGGGG CCGATATTTT CGTTCTTGTT
GCCGATGGCG CTCTGGACGA GATTGTCGGT TTCAATCCAG ATGAGGACCG GCTCGACCTG
TCTGGCTGGG AGATGCTGCG CAGCACCATG CAACTTTCTA TTGCCGCCAT CGAAGACGGG
GCCCGGATCA CCTATCGCGA TGAAACCTTG GTGCTGCGCA GCGTGGACGG TGCGCCGCTT
GATCCGGGCG TGCTTGCCGG GCTCGACATG CTGGAGCTCA GCCGGGTGCC GATCTTGCCG
ACGGTGTTGC AGGAGTCGTT CCAGGGTAGC TCTCTCGAGG AGTTGCTGGA GGGAAATGCC
GGGGTCAACA TCTTGCGCGG CCGGGCTGGC AATGATCGGC TAATGGGTCA CGGCGGTGAC
GACTGGATCG AAGGTGGGAT CGGCGCGGAC ACCCTGGAGG GCGGGGCCGA TGACGATCTG
TTGTTTGGCA ATGCTGGCCA CGACACCCTG CTGGGCCAGA GCGGCAACGA CTTCCTGGAG
GGCAATGCAG GCAATGATCT GATCCGCGGT GGTTCGGGCC ATGACTGGCT GACCGGGGGC
CAGGGCAACG ATCACCTGTT GGGCGAGATC GGCGACGACA TCCTCTGGGG CCTGGGCGGC
AGCGACACTC TGGAGGGGGG CGACGGCGCA GATCAGCTAG AAGGTGGCGA TGCCAATGAT
TGGCTGTTCG GGGATGCGGG CAATGACACG TTGAATGGCG GGGTCGGGTT CGACTGGCTC
GACGGCGGTG ACGGCAATGA CATCCTGACC GGACTGGAAG GGTTCGACAG CCTCTTTGGC
GGCGCGGGCG ATGACAGCCT GTCGGGCAAT GCGGGTAACG ACCTGATCGA GGGCGGCGCG
GGCGATGACA CCCTGCAGGG TGGCCAGGGG ATCGATGTGC TCCGCGGCGG CGCAGGCAAC
GACCTGATCC GCGGCCAGAC CGGGTTCGAC GAGCTCTTCG GTGGGGCGGG CAATGACACT
CTGCAGGGCG GTGAGGGCAA TGACCGGCTG GCCGGCGAGG CGGGCAACGA TGTCCTGACC
GGCGGGATTG GGGCGGATGT GTTCGTCTTC GATGCAGGCA CCGACGTGAT CACGGATTTC
TCGCTCATGG TGGACCGGCT GGCGCTGGAC GGCGCGGCGC TGGGGATCGC AGGGCTGGAC
GGGGCGACCG TGCTGGAGCG GTTCTCCCAA CGGGACGCGG AGGGGGTTCA GCTGCGCTTC
GAGACGGGCG ACGGGCTCGA TCTGGAGGGG GTGTTCAACC TCACCCGGCT GGCGGACCTG
ATCGATATCT TCTGA
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| Protein sequence | MAQFSEITAD HFGMIYTGNM PNRVSLENFI EITNYTGIES IRWPGGTLSE IGFRNAGDEN
YYDLTADNLL ENQSGTGAIP AGLSEILSVA VEEDLGVSII IPTLCYTDPI KNGMMESPNL
DLAFQEYYDF LEKLLVEKAW GKVPANFTLE IGNEASLHFG ENQDKYGQIA NTFLAAYDKI
LGDYAMDDPV DIAIQMGISQ NQSMNQIVIA QIDDDFSHHI DAVRNHELNK NHGLSWDKGW
AGLNDASKQY FDEWLEKTGK DERSLDHYVS AWNTGTPTVR DQDGNVKEPD PIADDYGMKE
LSAVVEMFAN FSLLGVDKAS HWGVAVSEAH PNETSSVNRD GSLNYTPKAE VIRLVHESLI
GTTLSHDITK DADGNQIRAG YFRSDIDGEN DPTPYRVFLF EDDSKYVMFI AANRFEMAET
DVEMEVEIIL SDYIGDPDVI GFAWSEQITV DDPVFNFSDT LDETSVLATR HSIQHWDEGF
TVNLSQNYEL VRVIASKQSP GKGNLHLWGS DAGDALQGGG GSDTLEGNAG TDMLFGANGG
DILRGGAGDD TLLGEAGDDD LQGGDGADIL HDGDGRDDLR GGTGADLFVL AADGLEDVIW
DFNPEEDQLD LSAWTTLRAT SQITFEATST GARLLHGNEV LILHSSGGTS LDRTFLPSIW
LLNSREVPLP DTVPAVFEQA GAPMPRAFQA NAVHGNDHYN ITGNGTDENV RAGAGRNLLV
DGAGADRMVG SAGADIFVLV ADGALDEIVG FNPDEDRLDL SGWEMLRSTM QLSIAAIEDG
ARITYRDETL VLRSVDGAPL DPGVLAGLDM LELSRVPILP TVLQESFQGS SLEELLEGNA
GVNILRGRAG NDRLMGHGGD DWIEGGIGAD TLEGGADDDL LFGNAGHDTL LGQSGNDFLE
GNAGNDLIRG GSGHDWLTGG QGNDHLLGEI GDDILWGLGG SDTLEGGDGA DQLEGGDAND
WLFGDAGNDT LNGGVGFDWL DGGDGNDILT GLEGFDSLFG GAGDDSLSGN AGNDLIEGGA
GDDTLQGGQG IDVLRGGAGN DLIRGQTGFD ELFGGAGNDT LQGGEGNDRL AGEAGNDVLT
GGIGADVFVF DAGTDVITDF SLMVDRLALD GAALGIAGLD GATVLERFSQ RDAEGVQLRF
ETGDGLDLEG VFNLTRLADL IDIF
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