| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3835 |
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| Symbol | |
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| ID | 5714364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 44882 |
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| End bp | 45445 |
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| Gene Length | 564 bp |
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| Protein Length | 187 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641276750 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001542046 |
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| Protein GI | 159046375 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.72947 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGGTG CACCCAAGGC GGACCCGCGC GACGAGATCG TCGAGCATTT GTCGGCCATG
CGCGCCTTTG CGGTCAGCCT GACACGCAAC TCGGCCACCG CCGATGACCT GGTGCAGGAC
ACGCTGGTCA AGGCCTGGTC GAATATCGAC AAGTTCCAGG CCGGGACGAA CATGCGGGCC
TGGCTCTTCA CCATCCTGCG TAACACCTAT TATTCCCTGC GCCGCAAGCG CAAGCGGGAG
GTCGAGGACA CCGAGGGCGA GATGGCCGCG GGCCTCGCCC AGAAACCCGA CCATGACGGG
CGCTTGCAGA TGCGCGAGTT TGGGGAAGCC TTCGCCGAGT TGCCGGACGA GCAGCGCGAG
GCGCTGATCC TGGTTGGCGC GGGCGGATTT TCCTATGAGG AAGCCGCCGA GATGTGCGGC
GTGCGGATCG GCACGATCAA GAGCCGGGTG AACCGTGCGC GCAACAAGCT GACCGAGCTT
CTGGAGATGT CGGAGGACGA CGCGATGGAG ATGACCGACA GCGTCACCCA GGGCATCGTT
GCCGGAAACC AGAGCGCGGC CTGA
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| Protein sequence | MSGAPKADPR DEIVEHLSAM RAFAVSLTRN SATADDLVQD TLVKAWSNID KFQAGTNMRA
WLFTILRNTY YSLRRKRKRE VEDTEGEMAA GLAQKPDHDG RLQMREFGEA FAELPDEQRE
ALILVGAGGF SYEEAAEMCG VRIGTIKSRV NRARNKLTEL LEMSEDDAME MTDSVTQGIV
AGNQSAA
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