| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3828 |
|---|
| Symbol | |
|---|
| ID | 5714357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009956 |
|---|
| Strand | + |
|---|
| Start bp | 36567 |
|---|
| End bp | 37361 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641276743 |
|---|
| Product | PaaX family transcriptional regulator |
|---|
| Protein accession | YP_001542039 |
|---|
| Protein GI | 159046368 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3327] Phenylacetic acid-responsive transcriptional repressor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.648927 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAGCC CGCCCTTTCC CGCGATCGTC CAGCACCTGA CCGGGGACCG GACCCCGCGG
GTCTGGTCCT TCCTGATCTC GGTCTTCGGC GATCTGGCCC AGGCCCCGGA CGCCCGGATC
AGCGCAGCCC TGCTGCGCCA GATCTCCGCC CAGATCGGCA TCAGGCCCGA GGCGATGCGT
GTCGCCCTGC ACCGGCTGCG CAAGGATGGC TGGATCGACA GCGCCCGCGC GGGCCGCACC
AGTGCCTATT TCCTCACCGA CCGCGGCCGG GCGCAAAGTG CGGCCGCCTC GCCGCGGATC
TACGGCACCG GCCCCGGGGC CGAGACCGCC TGGCTGGCCG CCTTCAACCC GGGTCAGCCA
GGGGCACACC AGGACGAGGC GGGCGTCTGG CTGTCGGCGA CCCTGCTGGT CAGCGCCACC
CGGCCGGCGA CTGCCGACGC CTTCGTCACC CCGCTGGGGC CGGGCACCGC CCTGCCCGAC
TGGATGACCG CCCGGATCTG CGACGCGACC ACGGTGCAGA TGGCCGCGGA CTTCGCCAGG
GCCCTGGCCG GTCTGCGGCC GTTGCTGGAC AGCGCGCCGG GTCTCACCAC GTTGGAGACC
ACCGCCCTGC GCGTGCTGCT GGTCCATGGC TGGCGCCGGA TCGTGCTGCG CACCCCGATC
CTGCCCGATC ACCTGTTTCC CGCAACCTGG CAGGGCCCGG TCTGCCGTGA CGGGGTGGCG
GACCTGCTCG CCCGCTACCC CAAGCGCCCC CTGGCCGAGC TGGAAGCCGC CCGCACTGCG
CTGCCTTGCG GCTGA
|
|---|
| Protein sequence | MQSPPFPAIV QHLTGDRTPR VWSFLISVFG DLAQAPDARI SAALLRQISA QIGIRPEAMR
VALHRLRKDG WIDSARAGRT SAYFLTDRGR AQSAAASPRI YGTGPGAETA WLAAFNPGQP
GAHQDEAGVW LSATLLVSAT RPATADAFVT PLGPGTALPD WMTARICDAT TVQMAADFAR
ALAGLRPLLD SAPGLTTLET TALRVLLVHG WRRIVLRTPI LPDHLFPATW QGPVCRDGVA
DLLARYPKRP LAELEAARTA LPCG
|
|---|
| |