Gene Dshi_3828 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3828 
Symbol 
ID5714357 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009956 
Strand
Start bp36567 
End bp37361 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content74% 
IMG OID641276743 
ProductPaaX family transcriptional regulator 
Protein accessionYP_001542039 
Protein GI159046368 
COG category[K] Transcription 
COG ID[COG3327] Phenylacetic acid-responsive transcriptional repressor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.648927 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAGCC CGCCCTTTCC CGCGATCGTC CAGCACCTGA CCGGGGACCG GACCCCGCGG 
GTCTGGTCCT TCCTGATCTC GGTCTTCGGC GATCTGGCCC AGGCCCCGGA CGCCCGGATC
AGCGCAGCCC TGCTGCGCCA GATCTCCGCC CAGATCGGCA TCAGGCCCGA GGCGATGCGT
GTCGCCCTGC ACCGGCTGCG CAAGGATGGC TGGATCGACA GCGCCCGCGC GGGCCGCACC
AGTGCCTATT TCCTCACCGA CCGCGGCCGG GCGCAAAGTG CGGCCGCCTC GCCGCGGATC
TACGGCACCG GCCCCGGGGC CGAGACCGCC TGGCTGGCCG CCTTCAACCC GGGTCAGCCA
GGGGCACACC AGGACGAGGC GGGCGTCTGG CTGTCGGCGA CCCTGCTGGT CAGCGCCACC
CGGCCGGCGA CTGCCGACGC CTTCGTCACC CCGCTGGGGC CGGGCACCGC CCTGCCCGAC
TGGATGACCG CCCGGATCTG CGACGCGACC ACGGTGCAGA TGGCCGCGGA CTTCGCCAGG
GCCCTGGCCG GTCTGCGGCC GTTGCTGGAC AGCGCGCCGG GTCTCACCAC GTTGGAGACC
ACCGCCCTGC GCGTGCTGCT GGTCCATGGC TGGCGCCGGA TCGTGCTGCG CACCCCGATC
CTGCCCGATC ACCTGTTTCC CGCAACCTGG CAGGGCCCGG TCTGCCGTGA CGGGGTGGCG
GACCTGCTCG CCCGCTACCC CAAGCGCCCC CTGGCCGAGC TGGAAGCCGC CCGCACTGCG
CTGCCTTGCG GCTGA
 
Protein sequence
MQSPPFPAIV QHLTGDRTPR VWSFLISVFG DLAQAPDARI SAALLRQISA QIGIRPEAMR 
VALHRLRKDG WIDSARAGRT SAYFLTDRGR AQSAAASPRI YGTGPGAETA WLAAFNPGQP
GAHQDEAGVW LSATLLVSAT RPATADAFVT PLGPGTALPD WMTARICDAT TVQMAADFAR
ALAGLRPLLD SAPGLTTLET TALRVLLVHG WRRIVLRTPI LPDHLFPATW QGPVCRDGVA
DLLARYPKRP LAELEAARTA LPCG