Gene Dshi_3823 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3823 
Symbol 
ID5714352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009956 
Strand- 
Start bp29860 
End bp30456 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content66% 
IMG OID641276738 
ProductTetR family transcriptional regulator 
Protein accessionYP_001542034 
Protein GI159046363 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0524018 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.237924 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCGCGCC CCATCGCCAA GGACCACGAC GCAAAGCGGA TGCATATCCT GAAGGTCGCG 
GCCCGCGTCT TCGCGGACCA GGGGTTCGCG CGCGCCTCGA TGGCCCAGGT GGCGAAGGAT 
TGCGGCATCT CGAAGGCCAA TATCTATCAC TATTACAGCA GCAAGGACGC GCTGCTCTTC 
GATATCCTCG ACACTTACCT GTCGGCCCTG CGCGACCGTA TCCTCGGGCT GGACCTGGCC 
GGGCTCGCCC CCGAGGCGCA GCTCGGGCGG ATCGTGACCG AGACCCTGCG CGCCTATGAG 
GGGATGGATC ACGAGCACAA GATCCAGACC GAGGGCATCC CGTTGCTGCC CCCGGAGCAG 
CAGAAGATCC TCAAGGCCTA TCAGCGCGAC CTCGTGGGGC AGATGAGCGG CATCGTGGCC 
GCGATCGCAC CGGAGGCGTT CGCGCAGGAC TCGCGCAAGC TGCGTGCGAC GGTGATGTCG 
ATCTTCGGAA TGCTCAACTG GTTCTACATG TGGAACAGCC CCGCCGACCG GCAGGCGCGG 
GACGACTACG CCGGGCTGGT CACGCGGCTG ACCCTGTCGG GGCTGCGCGG GCTCTGA
 
Protein sequence
MSRPIAKDHD AKRMHILKVA ARVFADQGFA RASMAQVAKD CGISKANIYH YYSSKDALLF 
DILDTYLSAL RDRILGLDLA GLAPEAQLGR IVTETLRAYE GMDHEHKIQT EGIPLLPPEQ 
QKILKAYQRD LVGQMSGIVA AIAPEAFAQD SRKLRATVMS IFGMLNWFYM WNSPADRQAR 
DDYAGLVTRL TLSGLRGL