| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3812 |
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| Symbol | |
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| ID | 5714341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 20139 |
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| End bp | 21494 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641276727 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | YP_001542023 |
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| Protein GI | 159046352 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.283332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.618849 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACCC AAGCGCAAGT CAGCGGTCTG ACCCGGGCGG CGACGCCCAT GGGCACGACC
GAAGGGTACA TGCCCGGTTT CGGCAATGAT TTCGAGACCG AGGCCCTGCC CGGTGCCCTG
CCGCAGGGCA TGAACAGCCC GCAGAAATGC AATTACGGGC TTTATGGCGA GCAGCTCTCG
GGCACCGCCT TCACCGATGT GCGCCCCGAG CGGACCTGGT GTTACCGGAT CCGGCCCTCG
GTCAAGCATT CCCACCGCTA CCGGCGGGTC GAGCTGCCCT ATTTCCGCTC CGCGCCGGAC
ATCCATCCGG AGGTCACGAG CCTCGGCCAG TACCGCTGGG ACCCGGTCCC GCACACGGAC
GCGCCGCTCA CATGGCTGAC GGGGATGCGC ACCATGACCA CGGCGGGGGA CGTGAACACA
CAAGTTGGCA TGGCCGCCCA CGTTTACCTC GTGACCGAGT CCATGCAGGA CGCCTATTTC
TACTCCGCCG ACAGCGAGAT GCTGGTGGTG CCACAGGAAG GTCGTTTGCG CTTTGCCACC
GAGCTGGGGA TCATCGATCT GGAACCGAAG GAGATCGCGA TCCTGCCGCG CGGCCTTCTC
TACCGGGTGG AACTGCTGGA CGGTCCCGCG CGGGGTTTCG TGTGCGAAAA CTACGGCCAG
AAGTTCGAGC TGCCCGGCCG CGGGCCGATC GGGGCCAACT GCATGGCCAA TCCGCGGGAT
TTCAAGACGC CCGTGGCGGC CTTCGAGGAC CGCGAGGTGC CCTCGACCGT GACGGTGAAA
TGGTGCGGCC AGTTCCACGA GACGCAGATC GGCCAGAGCC CGCTGGACGT GGTGGCCTGG
CACGGCAATT ACGCGCCCTG CAAATACGAT CTGCGCAATT ACTGCCCCGT GGGCGCGATC
CTGTTCGACC ATCCGGACCC GTCGATCTTC ACCGTGCTGA CCGCGCCCTC GGGCCAGCCG
GGCACCGCCA ATATCGACTT CGTGCTGTTC CGCGAGCGCT GGATGGTGGC CGAGGATACC
TTCCGCCCGC CCTGGTATCA CAAGAACATC ATGTCCGAGC TGATGGGCAA CATCTACGGC
CAGTACGATG CCAAGCCGCA GGGCTTCGTG CCCGGCGGGA TCAGCCTGCA CAACATGATG
CTGCCGCATG GCCCCGACCG CGACGCGTTC GAGAAGGCCT CCAACGCCAA TCTGGGCCCC
GACAAGCTCG ACAACACCAT GTCCTTCATG TTCGAGACCC GGTTTCCACA GCACCTGACC
CGCTTTGCCG GCACCGAGGC GCCGCTGCAG GACGACTATA TCGACTGCTG GAAGGACATC
GAAAAGAAGT TCGACGGCAC CCCGGGCAAG AAGTGA
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| Protein sequence | MNTQAQVSGL TRAATPMGTT EGYMPGFGND FETEALPGAL PQGMNSPQKC NYGLYGEQLS
GTAFTDVRPE RTWCYRIRPS VKHSHRYRRV ELPYFRSAPD IHPEVTSLGQ YRWDPVPHTD
APLTWLTGMR TMTTAGDVNT QVGMAAHVYL VTESMQDAYF YSADSEMLVV PQEGRLRFAT
ELGIIDLEPK EIAILPRGLL YRVELLDGPA RGFVCENYGQ KFELPGRGPI GANCMANPRD
FKTPVAAFED REVPSTVTVK WCGQFHETQI GQSPLDVVAW HGNYAPCKYD LRNYCPVGAI
LFDHPDPSIF TVLTAPSGQP GTANIDFVLF RERWMVAEDT FRPPWYHKNI MSELMGNIYG
QYDAKPQGFV PGGISLHNMM LPHGPDRDAF EKASNANLGP DKLDNTMSFM FETRFPQHLT
RFAGTEAPLQ DDYIDCWKDI EKKFDGTPGK K
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