| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3793 |
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| Symbol | |
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| ID | 5714322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | + |
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| Start bp | 1905 |
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| End bp | 2858 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641276708 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001542004 |
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| Protein GI | 159046333 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 0.335221 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGACTT TCCTGATACG TCGCGTCGCC TACACGATCC CGATCATGCT GGGCGTGTCG
CTGGTGTGCT TCGCGCTGGT GCATATCTCG CCCGGCGATC CGCTGGTCTC GATCCTGCCG
CCGGATGCGT CGGTGGAGTT GCAGCAGCAG CTCATGGCGA TCTACGGCTT CGACCGCTCC
TATCCCGAGC AGTTCATCCG CTGGCTCGGC CGAGCGGTGC AGGGGGACCT GGGCAATTCC
ATCGCCACCG GGCGGCCGGT GACGGCCGAG GTGCTGAACG CGGTGGGCAA CACGCTGATC
CTGGCGGTGA CCGCGACGAT CATCGGGTTC ACCTTCGGCG GGCTGTTCGG CTTCGTGGCC
GGGTATTTCC GTGACAGCTG GATCGACAAG CTGGCCTCGA CCATCTCGGT CGTGGGCGTG
TCGATCCCCC ATTACTGGCT GGGCATGGTG CTGGTCATCA TCTTCTCGGT CCAGTTGGGC
TGGCTGCCCG CGACCGGGGC GGGGCCGCGC GGGTCGAGCG AATGGGCCTT CGACTGGGAG
CATCTGCAAT ACCTGATCCT GCCCGCCGTC ACCATGTCGG TGATCCCCAT GGGGATCGTG
GCGCGGACGG TGCGGGCGCT GGTCGCGGAT ATCCTGCAAC AGGAATATGT CACCGGGCTG
CGGGCCAAGG GGCTCCTGGA TCGCGGGGTT CTGGCTCATG TGATCAAGAA CGCCGCCCCC
ACGGCCCTGG CGGTGATGGG GCTGCAGCTG GGCTACCTGC TGGGCGGATC GATCCTGATC
GAGACGGTGT TTTCCTGGCC CGGGACGGGG TTCCTGCTGG GACAGGCGAT TTTCCAGCGT
GACCTGCCGT TGTTGCAGGG GACGATCCTG GTGCTGGCGA TGTTCTTCGT CATTCTCAAC
CTGCTGGTGG ATGTCGCGCA GAGCGCGCTC GATCCCCGGC TGCAAAGGAG CTGA
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| Protein sequence | MLTFLIRRVA YTIPIMLGVS LVCFALVHIS PGDPLVSILP PDASVELQQQ LMAIYGFDRS
YPEQFIRWLG RAVQGDLGNS IATGRPVTAE VLNAVGNTLI LAVTATIIGF TFGGLFGFVA
GYFRDSWIDK LASTISVVGV SIPHYWLGMV LVIIFSVQLG WLPATGAGPR GSSEWAFDWE
HLQYLILPAV TMSVIPMGIV ARTVRALVAD ILQQEYVTGL RAKGLLDRGV LAHVIKNAAP
TALAVMGLQL GYLLGGSILI ETVFSWPGTG FLLGQAIFQR DLPLLQGTIL VLAMFFVILN
LLVDVAQSAL DPRLQRS
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