| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3779 |
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| Symbol | |
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| ID | 5714308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | - |
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| Start bp | 177946 |
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| End bp | 180075 |
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| Gene Length | 2130 bp |
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| Protein Length | 709 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641276694 |
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| Product | thiol:disulfide interchange protein DsbD 1 precursor |
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| Protein accession | YP_001541990 |
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| Protein GI | 159046318 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4232] Thiol:disulfide interchange protein
[COG4233] Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCGATT GCCTTTTGAT CCTGCGACGG GTTTTGCTTA TTCCCTTCGT GCTCCTGGCC
GTTGTCTCTG GAAGTGTCGC GGCAGCAACC TCTGCTGAAT ACCAGAGCGC GCCACTCACC
GCGCATCTCA TTAGTGTACA GGACGGCGTT CCCGAGAACA CACAGACTCT GTCAGCCGGG
CTTCACCTTC AACTGAACGA AAACTGGAAG ACCTATTGGC GGTCGGCGGG CGAGGTGGGA
ATACCGCCTT CGGTCGAATG GAGCGGTTCC GAAAACGTCG CAGATGTCGA ATTCATGTGG
CCCGCCCCGA CGCGCTTCAC CGCCTTCGGC ATCGAAAATT TTGGTTATGC GGGTGAAGTC
GTCTTTCCGC TGCGCATAAC GCTCAAAGAT CCCGGCGCAC CTGTGACTCT TTCCGCGCAG
GTCAAACTGC TGGTGTGCTC CAATGTCTGT GTCCCGGAAG AGTTTGACCT GTCACTTCGC
CTCGGACGGG GCAACGTCAT CGACAGCACT TCGGCTGGGC TGATCGGTAC GTTTTCCGAG
CGCGTCCCCG AAGGGGCCAA GACGAGCGGC GTCAGCGAGG CAAATGCCTT CATCGACGAA
GACCTCACGG AGTTGATCGT CAGCCTTCGC GTCGATGAAC CACTCCAGTC GCCGGATGTG
TTTCCCGAAC TGGGTATGGG TGTTGCGCTT GGCAAACCCG ATATCCGTTT GGGAGAAGAG
GATCGTTTGC TTTGGGCGCG CTTGCCGATC CTCTCGTCGA ATACGGATGT GACAGTGGCT
CCGTCGATTA CCGTCACCGA CGGCGAGAAC CGGGCCTTCA CGATCATCGC GGATCGCGTG
GCGCAAGGAA TAGCACCACC CTTTGAACTG GCCGCCACGA CACCGGACAT GATGGAACTG
ATCTGGATTG CCGCGATCGC GCTGCTGGGC GGATTGATCC TGAATGTGAT GCCCTGCGTG
CTGCCGGTGC TGTCCATCAA GGTGTCGTCT GTGCTCAAAC ACACCGATCA CGACACAACC
CGTGTCCGGT TCGGTTTCGT CGCTGCCAGC GCCGGCATCA TGACGTTCAT GTGGGGTCTG
GCGCTCGTCC TCTGGGCGCT CCAGACGGCA GGCCTCAGCG TCGGGTGGGG TTTGCAGTTT
CAAAGCCCGC TGTTTCTTGC GGCGATGATC GCTGTCCTGC TCGTCTTTTC GGCAAATCTG
TTCGGAGCGT TCGAGTTCGC CCTTCCACAC GGCATGCAGA CGCGGCTTGC AGGGGCCGGA
GGACGCAACG GGTATTCCGC CGACTTTTTC ACTGGCATGT TCGGTGCCGT CATGGCGACG
CCTTGTTCGG CACCGTTCCT CGGCACCGCG GTGGCCTTTG CTTTGGCCGG GCGTGGCGTG
GACATCCTCA TCGTCTTTAC GAGCCTCGGG CTCGGCCTCG CCCTGCCCTA TCTCGTCATC
GCCGCGTTCC CGCGTCTGGT CGCATTCATG CCCAAGCCTG GTCGATGGAT GCTGATCATC
AAAAGCGTCA TGGGGGTTTT GTTGCTTGCA ACCGCCGTGT GGCTGTTCTG GGTGCTCGAC
GGTGTCGCCG GGCTTGCGTC TGTCATCGCG GTCGCGGCGT TGTCCGGTCT CGCCGTTCTG
ATACTATCTC TCCCGAATGT GCAGTCCCAA TTCAGGTGGT CTATTGCCAT AGCCAGCCTT
GTCCTGGCCA TTGCCGCAGG TCCTCTCTTG CAGCAATCAG CACCTGCGCG TTCGACGCCG
CAGTTGGCAA TGGCTTGGAT CGCATTTGAT CGTTCGGAAA TAGCGAAACG CGTGTCCGCA
GGAGAGGTCG TTTTTGTCGA TGTGACCGCT GACTGGTGTC TGACTTGCAA AGCGAACAAG
ACACTTATCA TCGATCGGGA GCCAGTCCGG AGCGCGCTTG AAGCGCCTGG AGTCACGGCG
ATGCAGGCAG ATTGGACACG CCCGGACACG CGCATTTCCC GCTACCTTGA GAGTTTCGGC
AGATACGGCA TCCCCTTCAA TGCCGTCTAC GGACCATCGG CACCGAACGG CATTGTGCTG
TCCGAATTGC TAAAAACCGA GGACGTGATG AACGCCTTGG CGCAAGCCAG TGGTCGGGAT
GTTTCCGCAA AGGTTGCCGG ACAGGAGTGA
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| Protein sequence | MIDCLLILRR VLLIPFVLLA VVSGSVAAAT SAEYQSAPLT AHLISVQDGV PENTQTLSAG
LHLQLNENWK TYWRSAGEVG IPPSVEWSGS ENVADVEFMW PAPTRFTAFG IENFGYAGEV
VFPLRITLKD PGAPVTLSAQ VKLLVCSNVC VPEEFDLSLR LGRGNVIDST SAGLIGTFSE
RVPEGAKTSG VSEANAFIDE DLTELIVSLR VDEPLQSPDV FPELGMGVAL GKPDIRLGEE
DRLLWARLPI LSSNTDVTVA PSITVTDGEN RAFTIIADRV AQGIAPPFEL AATTPDMMEL
IWIAAIALLG GLILNVMPCV LPVLSIKVSS VLKHTDHDTT RVRFGFVAAS AGIMTFMWGL
ALVLWALQTA GLSVGWGLQF QSPLFLAAMI AVLLVFSANL FGAFEFALPH GMQTRLAGAG
GRNGYSADFF TGMFGAVMAT PCSAPFLGTA VAFALAGRGV DILIVFTSLG LGLALPYLVI
AAFPRLVAFM PKPGRWMLII KSVMGVLLLA TAVWLFWVLD GVAGLASVIA VAALSGLAVL
ILSLPNVQSQ FRWSIAIASL VLAIAAGPLL QQSAPARSTP QLAMAWIAFD RSEIAKRVSA
GEVVFVDVTA DWCLTCKANK TLIIDREPVR SALEAPGVTA MQADWTRPDT RISRYLESFG
RYGIPFNAVY GPSAPNGIVL SELLKTEDVM NALAQASGRD VSAKVAGQE
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