| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3778 |
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| Symbol | |
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| ID | 5714307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | + |
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| Start bp | 176766 |
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| End bp | 177917 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641276693 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001541989 |
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| Protein GI | 159046317 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTGGG GTATTTTCGT TCTTTTGACG CTGGTCGCAA TCGGAATTGT CCTCTACCCG
CTGCTGCTGT CCAAATCGAA CACTCTCACC AGAGGGGATG CGGTACCGGC GATCCTCGCC
GATCAGATGC GGGAAATCCA ACGAGACATG GACCGCGGTT TGATTTCTGA ACAGGAAGCT
CAAGCGGCCA GACTCGAGAT CAAGAAACGG ATCCTCGCGA CGACCCGCAA TTCGGAAGAA
AAAGCCGGAT CATCCCGTAA TGGTGGCAGA GTCACTCTCG TTGTCGCGGC GGTCCTCGCG
CCGGTTATTG CCGCGGGCTA CTATCTGACG ATGGGATCGC CGGAGGTTCC TTCAATGGCC
TTCGCTGCCC GTGCAGAGGA GCGGGCACAG ACTGATGAAG TGACGGCGCT GGCAATACAA
CTTCGCGAAA GGCTTGTATC CGATCCGACC GGCGGCCCTA GCGAAGGGTG GATGCTGTTG
GGCCAGACCT ATCAGCGCAT GGGCAGAGCA GCCGATGCCG TCGAAGCCTT CGAAGTCGTT
GCCGAACGGG AGGATGCCAC CTCCGCGACA TTCTCCATGC TGGCAGAGGC TGTCGCGGTT
GCCAATGACG GCGTTGTTAT TCCACGGGCG AAATTGGCCA TTGATCGCGC TTTGGACCTT
GACCCATCCA ATCCTGCGGC AACCTACTTC GAGTCTCTGT ATTACTTTCA GCAAGAAGAG
ACGCGTAAGG CCTACGATCT GCTTGTTTCA CGACTGAATC AGGAAGAGGC TTACGTTCCC
TGGATGGAGA CCTATGCAGC GCAGATCAAC CGGATTGCAG CGGCAGCTGA CCTTCCGGTC
GTCAATCTAC CCAGCGGGCC GACGTCGCAA CCAGGCCCGA GTGCCGCAGA TGTCGCGGCG
GCGTCGGAGA TGAATGACGC GGATCGCGCG GAGTTCATCC GATCGATGGT CTCGCGGCTG
GCCGAGCGTC TTGAGGATGA ACCGGACGAT CTGGATGGTT GGATGCGGCT GGCAAATGCC
TATACCGTCC TTCAGGAGCC CGATCGCGCC GTTGAGGCCT ACCGCAAGGC TGAAGCGCTG
TTGGAGCAGC AGCCCGCCAG TGATCCTCGG CGTGCGGCGG TCCGTGCCGC GCTTGAGCGG
CTCGGCGGCT GA
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| Protein sequence | MIWGIFVLLT LVAIGIVLYP LLLSKSNTLT RGDAVPAILA DQMREIQRDM DRGLISEQEA
QAARLEIKKR ILATTRNSEE KAGSSRNGGR VTLVVAAVLA PVIAAGYYLT MGSPEVPSMA
FAARAEERAQ TDEVTALAIQ LRERLVSDPT GGPSEGWMLL GQTYQRMGRA ADAVEAFEVV
AEREDATSAT FSMLAEAVAV ANDGVVIPRA KLAIDRALDL DPSNPAATYF ESLYYFQQEE
TRKAYDLLVS RLNQEEAYVP WMETYAAQIN RIAAAADLPV VNLPSGPTSQ PGPSAADVAA
ASEMNDADRA EFIRSMVSRL AERLEDEPDD LDGWMRLANA YTVLQEPDRA VEAYRKAEAL
LEQQPASDPR RAAVRAALER LGG
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