| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3775 |
|---|
| Symbol | |
|---|
| ID | 5714304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009955 |
|---|
| Strand | + |
|---|
| Start bp | 173724 |
|---|
| End bp | 175724 |
|---|
| Gene Length | 2001 bp |
|---|
| Protein Length | 666 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641276690 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_001541986 |
|---|
| Protein GI | 159046314 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.793709 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCCGG AAATTGGTCA CTTCGCACTG GCCCTCGCAC TGGCGCTTGC GCTTGTTCAG
AGTGTTCTAC CGATTGCAGG TGCGTCGCGT AGAAATGCCG TCTGGATGAA ATCCGCCCAG
GCGACGGCAA TAGGACAAGT GCTGTTTGTG GCCATCGCCT TCGCAGCGCT GATGCAGGCT
TTCATCGTCA GCGATTTTAC CGTCAGGAAC GTCGTCGAGA ACTCCCATTC GCTCAAGCCA
ATGCTCTACA AGGTGGCCGG GACCTGGGGC AGCCATGAGG GTTCGCTGCT GCTCTGGATC
CTGATACTCG CGGTGTTCGG CGCGGGCGTC GCCTGGTTCG GATCGAACAT CCCCGCCGAG
ACCAAGGCGC GCACCTTGTC GGTGCAGGCG TGGATCAGCG TCGGCTTCCT GTCCTTCCTG
CTGCTGACGT CGAACCCCTT CGAGCGGGTG TTTCCGCCGC CGCTCGACGG CAATGACCTC
AACCCGTTGC TTCAGGACAT GGGTCTCGCC ATGCACCCGC CGCTCTTGTA TTTCGGGTAT
GTCGGCTTCT CCATCGTGTT TTCCTTTGCC GTTGCGGCTC TTCTGGAAGG GCGCGTCGAT
CCGGCCTGGG CCAGATGGGT CCGCCCGTGG ACATTGGCCG CGTGGGTCAG CCTTACGGCA
GGTATCGCTC TTGGATCGTG GTGGGCCTAT TATGAACTGG GCTGGGGCGG CTGGTGGTTC
TGGGACCCGG TCGAGAACGT GAGCTTCATG CCCTGGCTTC TGGGCACGGC GCTGCTGCAT
TCCGCCATCG TCACCGAAAA GCGCGACGCG TTCAAAAGCT GGACCATCCT ACTTGCCATC
CTGACTTTCT CGCTTTCGCT GCTCGGGACG TTCATCGTCC GGTCAGGCCT GCTTACATCC
GTGCATGCCT TCGCCGTCGA TCCAGAGCGC GGGCTTTACA TTCTGGGTCT GCTGGCCGTG
TCCATCGGTG GGTCGCTGGC GCTCTACGCC TGGCGGGCGC CCGAAATGGA GCCGGGTGGT
CTGTTTCGCC CGATCAGCCG CGAGGCCGGG CTGCTCGTGA ACAACCTCAT TCTGGCCGCC
GCTACGGGAA CGGTCCTGTT CGGGACGCTT TATCCACTGA TCCTGGAGGC TGTCACCGGG
GACAAGATCT CGGTCGGTCC ACCTTTCTTC AACGCGGCCT TCATTCCGAT GATGCTGGCA
CTGGTCGTGT TCATGGGTCT TGGTCCATTC CTGTCGTGGA AGCGGGCTGA TATCGCCGGT
TTGCTCGATC GCATCCAATT CGTGGCCGTG CTGGCGGTCA TTGCAGCCTT GGCCGCATGG
TATCTTCTGA ACGGTGGGCC GATCATGGCC TATCTTGCCA TCCTCGGCGC AGCGTGGCTG
CTTTTTGCGA CCCTGCGGGA ATGGGCGCTA CGCATCCGTC TGTTCGAGGT TTCCCTTGCA
GAGAGCGCGA GACGCGTGCG CAACCTGCCA CGCGCCTCTC ACGGTATGAC GCTTGCCCAT
GCCGGCGTCG CTGTGTTGAT GATGGGGATG ATCGGCTCGA CCGGATGGAA GAGTGAGGAG
ATCGTCTTTG CCGCCCCCGG GACCGAAGTC ACGATCGCCG GGTTCGACAT CACCTTCGAA
GGGGCCGCAA AGGTTCAAGG GCCGAACTAC ATCGCGGATC GCGGCACCCT TGTGGTGCGT
CGGGATGGCG AATTGGTCAC GACACTTTTC CCGGAACGGC GGTATTACCC GGTCGCGGAA
AGCCAGACGA CGGAGTCGGC CATCCGCTCC ACATTGGCGG GTGATCTCTA TACGTCGATT
GCAACGCCAG CCTCCGATCA AGTGAACAAC GCCGGAGCAT GGACCCTTCG GATCCTTTAT
GAACCGCTCG TCAACCTGAT CTGGATCGGC TCGATCCTGC TGGTGATCGG TGGCTGTTTG
TCCTTGTCGG ATCGCCGTTT GAGGGTCGGG GCGCCGCGCC GTGCCAAACA GCCAGCCACC
GATGCCGTTC CTGCCGAGTA G
|
|---|
| Protein sequence | MVPEIGHFAL ALALALALVQ SVLPIAGASR RNAVWMKSAQ ATAIGQVLFV AIAFAALMQA
FIVSDFTVRN VVENSHSLKP MLYKVAGTWG SHEGSLLLWI LILAVFGAGV AWFGSNIPAE
TKARTLSVQA WISVGFLSFL LLTSNPFERV FPPPLDGNDL NPLLQDMGLA MHPPLLYFGY
VGFSIVFSFA VAALLEGRVD PAWARWVRPW TLAAWVSLTA GIALGSWWAY YELGWGGWWF
WDPVENVSFM PWLLGTALLH SAIVTEKRDA FKSWTILLAI LTFSLSLLGT FIVRSGLLTS
VHAFAVDPER GLYILGLLAV SIGGSLALYA WRAPEMEPGG LFRPISREAG LLVNNLILAA
ATGTVLFGTL YPLILEAVTG DKISVGPPFF NAAFIPMMLA LVVFMGLGPF LSWKRADIAG
LLDRIQFVAV LAVIAALAAW YLLNGGPIMA YLAILGAAWL LFATLREWAL RIRLFEVSLA
ESARRVRNLP RASHGMTLAH AGVAVLMMGM IGSTGWKSEE IVFAAPGTEV TIAGFDITFE
GAAKVQGPNY IADRGTLVVR RDGELVTTLF PERRYYPVAE SQTTESAIRS TLAGDLYTSI
ATPASDQVNN AGAWTLRILY EPLVNLIWIG SILLVIGGCL SLSDRRLRVG APRRAKQPAT
DAVPAE
|
|---|
| |