| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3762 |
|---|
| Symbol | |
|---|
| ID | 5714291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009955 |
|---|
| Strand | + |
|---|
| Start bp | 164832 |
|---|
| End bp | 165362 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641276677 |
|---|
| Product | ISSpo6, transposase OrfB |
|---|
| Protein accession | YP_001541973 |
|---|
| Protein GI | 159046301 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3335] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.178592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.256949 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGAC ATCTGGAAAG GCTGGCTTTC ATCGACGAGA CATCGCTCAA GACGAACATG
GCCAAGACCA CCGGCTGGGC CCCGCGCGGG CAACGCCTGG TCGATCACGC GCCGTTCGGG
CATTGGCGCA CCCAGACCTT CATCGGTGCC CTGCGCCATG ATCGCCTCGA TGCCCCGTGG
GTGATCGATG GCGCAATGAA CGGCGAGTTG TTCGACCTCT ATATCGAGAC CCAGCTGGTG
CCGACCTTGG GTCCGGGCGA CGTGGTCATC CTCGACAACT TGTCGAGCCA TAAGAGCCCC
GGCGCAGCCA AGGCCATGCG AGATATCGGC GCGTGGTTCC TGTTCCTGCC GCCCTACAGT
CCCGACCTCA ACCCGATCGA GATGGCCTTC TCAAAGCTCA AGGTCCTGAT CCGAAAGGCT
GCAGCCCGAA CCTACCATGA ACTTTGGCAG GCTGTCGGTC ATGTGTGCGA CCTCTTCACC
GACGAGGAAT GCTACAACTT CTTCAAGGCC GCAGGATATA AAACCGATTA A
|
|---|
| Protein sequence | MARHLERLAF IDETSLKTNM AKTTGWAPRG QRLVDHAPFG HWRTQTFIGA LRHDRLDAPW
VIDGAMNGEL FDLYIETQLV PTLGPGDVVI LDNLSSHKSP GAAKAMRDIG AWFLFLPPYS
PDLNPIEMAF SKLKVLIRKA AARTYHELWQ AVGHVCDLFT DEECYNFFKA AGYKTD
|
|---|
| |