Gene Dshi_3758 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3758 
Symbol 
ID5714287 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009955 
Strand
Start bp162022 
End bp162411 
Gene Length390 bp 
Protein Length129 aa 
Translation table11 
GC content56% 
IMG OID641276673 
Producttransposase IS4 family protein 
Protein accessionYP_001541969 
Protein GI159046297 
COG category[L] Replication, recombination and repair 
COG ID[COG3293] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0586009 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.260182 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACCA AGCTGCACGC CATTTGTGAC AGCCAAGGAC GCCCGCTGAA CCTGTTCGTT 
ACGGCTGGTC AGGTCAGTGA TTACATCGGC GCACGGGCGT TAGTCAGCAG CCTTCCGAAG
GTCGATTGGC TACTCGGTGA CCGCGGCTAT GACGCCGATT GGTTCAGAGA AGCGTTGCAA
GACAAAGGGA TACGCCCCTG CATACCGGGT CGAAAGCAAC GCAAGGCAAC AGTCAAATAC
GACAAACGTC GATACAAGCG CCGCAATCGG ATCGAGATCA TGTTTGGCAG GCTGAAGGAT
TGGCGGCGTG TGGCGACCCG CTACGACCGA TGCCCAAAGG TCTTCCTATC AGCAATCGCC
CTTGCTGCAC TCGTCATTTA CTGGCTATGA
 
Protein sequence
MNTKLHAICD SQGRPLNLFV TAGQVSDYIG ARALVSSLPK VDWLLGDRGY DADWFREALQ 
DKGIRPCIPG RKQRKATVKY DKRRYKRRNR IEIMFGRLKD WRRVATRYDR CPKVFLSAIA
LAALVIYWL