Gene Dshi_3739 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3739 
Symbol 
ID5714268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009955 
Strand
Start bp145289 
End bp146146 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content59% 
IMG OID641276654 
Productintegrase catalytic region 
Protein accessionYP_001541950 
Protein GI159046278 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGTTTC GGTTCGTCGA AGAACATCGT GGGGCCTTCC CGATCGACCG GTTGTGTCAG 
GTTCTGAACG TCAGCACTCG CGGGTTGCGG GCTTTCCGCA GCCGTCCGGC CAGTCGCCGG
CAGCGCATGG ATATGGTCGT TTTAGCGCAC ATCAAGGAGC AGTCGCGGCT GAGCCTGGGC
AGCTATGGCC GCCCACGAAT GACCGAGGAA CTGAAGGAGG TTGGCGTCGA TGTGGGGCAC
CGCCGGGTTG GGCGTTTGAT GCGTGCGAAC GGGATTACCG TTGAGAGAAC ACGCAAGTTC
AAGGCAACAA CCGACAGCGA TCACACGTTC AACATCGCCC CGAACCTGCT GAATCGCGAC
TTCAGTGCGG CCGGGCCGAA CCAGAAATGG GCAGGCGACA TCAGCTACAT CTGGACCCGC
GAGGGCTGGC TGTATCTGTC AGTCATCTTG GACCTGCATT CGCGTCGTGT CATCGGCTGG
GCTGTCAGCA ACCGTATGAA GCGTGATCTG GCGATCCGGG CCTTGAAGAT GGCCATTGCC
TTCAGGTCGC CGCCCAAGGG CTGCATCTTC CACAGTGATC GCGGCAGCCA ATACTGTTCG
CATGACTACC AGAAGATCCT GCGCCAGCAT GGCTTCAGGG CCTCCATGAG CGGTAAAGGT
AATTGTTATG ACAACGCGGC CGTTGAGACA TTTTTCAAAA CCATCAAGGC CGAGCTGATC
TGGCGGCGGT CATGGGCAAC AAGGCGGCAA GCTGAGATGG CAATCTTCGA ATACATCAAT
GGGTTCTACA ATCCGCGGCG GCGGCACTCA GCACTGGGCT GGAAAAGCCC GGTCGCCTTC
GAACGGAAAG TGGCCTAA
 
Protein sequence
MRFRFVEEHR GAFPIDRLCQ VLNVSTRGLR AFRSRPASRR QRMDMVVLAH IKEQSRLSLG 
SYGRPRMTEE LKEVGVDVGH RRVGRLMRAN GITVERTRKF KATTDSDHTF NIAPNLLNRD
FSAAGPNQKW AGDISYIWTR EGWLYLSVIL DLHSRRVIGW AVSNRMKRDL AIRALKMAIA
FRSPPKGCIF HSDRGSQYCS HDYQKILRQH GFRASMSGKG NCYDNAAVET FFKTIKAELI
WRRSWATRRQ AEMAIFEYIN GFYNPRRRHS ALGWKSPVAF ERKVA