| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3739 |
|---|
| Symbol | |
|---|
| ID | 5714268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009955 |
|---|
| Strand | + |
|---|
| Start bp | 145289 |
|---|
| End bp | 146146 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641276654 |
|---|
| Product | integrase catalytic region |
|---|
| Protein accession | YP_001541950 |
|---|
| Protein GI | 159046278 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2801] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTTTC GGTTCGTCGA AGAACATCGT GGGGCCTTCC CGATCGACCG GTTGTGTCAG
GTTCTGAACG TCAGCACTCG CGGGTTGCGG GCTTTCCGCA GCCGTCCGGC CAGTCGCCGG
CAGCGCATGG ATATGGTCGT TTTAGCGCAC ATCAAGGAGC AGTCGCGGCT GAGCCTGGGC
AGCTATGGCC GCCCACGAAT GACCGAGGAA CTGAAGGAGG TTGGCGTCGA TGTGGGGCAC
CGCCGGGTTG GGCGTTTGAT GCGTGCGAAC GGGATTACCG TTGAGAGAAC ACGCAAGTTC
AAGGCAACAA CCGACAGCGA TCACACGTTC AACATCGCCC CGAACCTGCT GAATCGCGAC
TTCAGTGCGG CCGGGCCGAA CCAGAAATGG GCAGGCGACA TCAGCTACAT CTGGACCCGC
GAGGGCTGGC TGTATCTGTC AGTCATCTTG GACCTGCATT CGCGTCGTGT CATCGGCTGG
GCTGTCAGCA ACCGTATGAA GCGTGATCTG GCGATCCGGG CCTTGAAGAT GGCCATTGCC
TTCAGGTCGC CGCCCAAGGG CTGCATCTTC CACAGTGATC GCGGCAGCCA ATACTGTTCG
CATGACTACC AGAAGATCCT GCGCCAGCAT GGCTTCAGGG CCTCCATGAG CGGTAAAGGT
AATTGTTATG ACAACGCGGC CGTTGAGACA TTTTTCAAAA CCATCAAGGC CGAGCTGATC
TGGCGGCGGT CATGGGCAAC AAGGCGGCAA GCTGAGATGG CAATCTTCGA ATACATCAAT
GGGTTCTACA ATCCGCGGCG GCGGCACTCA GCACTGGGCT GGAAAAGCCC GGTCGCCTTC
GAACGGAAAG TGGCCTAA
|
|---|
| Protein sequence | MRFRFVEEHR GAFPIDRLCQ VLNVSTRGLR AFRSRPASRR QRMDMVVLAH IKEQSRLSLG
SYGRPRMTEE LKEVGVDVGH RRVGRLMRAN GITVERTRKF KATTDSDHTF NIAPNLLNRD
FSAAGPNQKW AGDISYIWTR EGWLYLSVIL DLHSRRVIGW AVSNRMKRDL AIRALKMAIA
FRSPPKGCIF HSDRGSQYCS HDYQKILRQH GFRASMSGKG NCYDNAAVET FFKTIKAELI
WRRSWATRRQ AEMAIFEYIN GFYNPRRRHS ALGWKSPVAF ERKVA
|
|---|
| |