Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3736 |
Symbol | |
ID | 5714265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009955 |
Strand | - |
Start bp | 142349 |
End bp | 143254 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641276651 |
Product | integrase catalytic region |
Protein accession | YP_001541947 |
Protein GI | 159046275 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGCCT TCATTGAGGA TCAGCGCGTT GTTTACGGTG TCGAGTCGAT CTGCAGGGTG CTGCCGATCG CGCCGTCAAC ATTCTATCAC CACCTGGCGT GCCTCGCTGA TCCGTCCAAA GCTTCGGCCC GGCATCAGCG GGATACGGAG CTGCGCCCGG AGATCAAACG TGTCTGGGAT GAGAATTATC AGGTCTACGG GGTCCGTAAG GCATGGCATC AGCTGAAGCG CGAGGGCTTT GAGCTGGCGC GCTGCACGGT GGAGCGGCTG ATGAAACATA TCGGCATCCG TGGGGCTGTG CGCGGCAAGG TGGTCAAAAC AACCGTCCCT GACACGTCAG CGCCTTGTCC GCGTGACAAG GTGAACCGCG TGTTCCGGGC ACCAGCCCCG AACCTCCTCT GGGTCAGCGA TTTTACCTAC GTGTCGACAT GGCAGGGCTT TGTCTATGTT GCCTTCGTCA TCGACACGTT TGCAGATCGC ATCGTCGGCT GGCGGGTCTC ACGGTCGGCC AAAACAGACT TTGTTCTCGA TGCTCTTGAA CAGGCCCTGC ATGATCGACG GCCGGTCCAA AAGAGCGGCT TGGTCCACCA CTCGGATCGT GGCGGGCAAT ATTTATCCAT TCGCTATACC GAGCGTCTGG CCGAAGCTGG CATCGAGCCA TCGGTCGGCA GCGTCGGGGA TTCCTATGAC AACGCCCTCG CAGAAACGAT CAATGGTCTA TACAAAACCG AGCTGGTCCA TCGTCAAGGA CCGTGGCGCA ATATGCAGGA TCTGGAAATG GCGACACTCG GCTGGGTCGA TTGGTTCAAC AACCGGCGCC TGCTTGGACC CATCGGAAAC ATCCCGCCAG CAGAGGCTGA AGACAACTTC TATGCATACC GCGAAGTGCT CGATATGGTC GCGTGA
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Protein sequence | MIAFIEDQRV VYGVESICRV LPIAPSTFYH HLACLADPSK ASARHQRDTE LRPEIKRVWD ENYQVYGVRK AWHQLKREGF ELARCTVERL MKHIGIRGAV RGKVVKTTVP DTSAPCPRDK VNRVFRAPAP NLLWVSDFTY VSTWQGFVYV AFVIDTFADR IVGWRVSRSA KTDFVLDALE QALHDRRPVQ KSGLVHHSDR GGQYLSIRYT ERLAEAGIEP SVGSVGDSYD NALAETINGL YKTELVHRQG PWRNMQDLEM ATLGWVDWFN NRRLLGPIGN IPPAEAEDNF YAYREVLDMV A
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