| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3711 |
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| Symbol | |
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| ID | 5714240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | - |
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| Start bp | 116503 |
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| End bp | 117483 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641276627 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001541923 |
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| Protein GI | 159046251 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.38802 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTTCA ACCGCTTTTC AAAAGCAGCC CTGACGGCCC TGACACTGGG CCTTTCGAGC
GCCGGCATCG CCGAGGCCAA GGATTTCCGA CTGGGCACGA TCGTGCCGTC GGGCCATGCC
TGGAACGAGG CCGCACGCGC CTTTGCCGCG GATCTTGCCG AGGCATCGGG CGGCGCGCAC
AGCGTCGAGG TTTTCCCCGC CGGCCAATTG GGCAGCGAGG AACAGATGGT CCAGCAGTTG
CAGACCGGCG CTCTGGATTT CGCCTTTCTG ACCATTGCCG ACGTGTCAAA CCGTATCCCG
GCCTTCGGCG CGCTCTACAC GCCGTTCCTT GTCGAGGACA CGGGCGAAGC GGCCAAGATA
CTCAAGGGCG ACACCACGCA GGCATTGCTC GACCGGCTTC CGCAGGAGAT GGGCGTCGTC
GGCATCGGCT ACGGTCTGGC CGCCATGCGG CAGATGATGG CGACCGCGCC GGTCGAGAAC
CTCGGCGATC TCGAAGGCCT GAAGATGCGG ATCACACCGT TCAAGCCGTT CCGCGATTTC
TACGACCTGC TGGGAATTGC GCCCACGCCA ATGCCGTTGC CCGATGTCTA CGACGCGCTG
GCCAACGGCC AGGTGGACGC AATGGACATC GACGCCGAGC TGGTCGTCAA CTTCAAGTTC
TACGAACGCG CCGATCATCT TCTGCTGACC AACCACGCGA TGTTCCCGAT GGTCGGGCTG
GTGTCCGGCC GCGTCTGGGC GGAACTCTCC GATGAGGACA AGCAGATGGT CCGCGAACAC
ATGCGTGCGG CCCTGTCCGA TCTGATGGAT CACTACGTCG AGGCCGAACC GAAGCTGATC
GCACAGATCG AAGAGACCGG CATCGAAGTG CGCAAGGTTG ACCCGGCGTT TTTCGGCGAT
GTCACGTCAC GCTGGGAAGA AGTCTGGGCC GATCAGAAAG ACGTGATCGA CGCGCTGCGC
GCCGAAGCGG CTGCATTCTG A
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| Protein sequence | MTFNRFSKAA LTALTLGLSS AGIAEAKDFR LGTIVPSGHA WNEAARAFAA DLAEASGGAH
SVEVFPAGQL GSEEQMVQQL QTGALDFAFL TIADVSNRIP AFGALYTPFL VEDTGEAAKI
LKGDTTQALL DRLPQEMGVV GIGYGLAAMR QMMATAPVEN LGDLEGLKMR ITPFKPFRDF
YDLLGIAPTP MPLPDVYDAL ANGQVDAMDI DAELVVNFKF YERADHLLLT NHAMFPMVGL
VSGRVWAELS DEDKQMVREH MRAALSDLMD HYVEAEPKLI AQIEETGIEV RKVDPAFFGD
VTSRWEEVWA DQKDVIDALR AEAAAF
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