| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3709 |
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| Symbol | |
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| ID | 5714238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | - |
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| Start bp | 114610 |
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| End bp | 115872 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641276625 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001541921 |
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| Protein GI | 159046249 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCCGC TTTCCTTCGG CCTGCTGCTG TTTGCCGGCG TGCCCATCGC GCTGGTGCTG
GCGATCACCG CGATGATCTA CATCTGGGCC AGCGGCAACG ACGTGCTGTT CCTGTCCTAT
CCGCAACAAT TGTATGGCGG GCTGGAGAAA TACGGGCTGC TGGCGATCCC GCTCTTCATG
CTGGTGGGCG AGCTGATGAA CGAGGGCGGC ATCACCAAGC GTCTGGTCAA ATTTGCCAGC
GTCTTTGTCG GGTCGCTGCG CGGCGGGCTG GCCTACATCA ACCTTGTCGC CAACATGTTC
ATGGCCGCCA TCATTGGCTC GACCAACGCG CAGATCGCGG TGATGGGCCA TGTGATGGTG
CCCGAGATGG TCAAGCGTGG CTATGACCGG AACTTCGCCG CCGCCGTGAC CGCGGCGGGC
GGGCTGATGT CGCCGATCAT TCCGCCGTCG ATGCTCTTCG TGATCTACGG CGTTCTGGCG
CAGATCAGCA TCGGCGATAT GTTCATCGCC GGGATCATTC CCGGCCTGCT GATGGGAGCC
GCGTTCATCC TTGTCGTCGT GGTCCTGGGC TTTTTCTACA CCTACCCCAC GGAAGCGAAG
CTGTCGCGCG GCATGGCGGT ATCGCACATC CTGCGGGCGC TCCCGTCGCT GTCCATCCCG
GTGGTCATCA TCGGCGGGAT CGCGGGGGGC ATCGCCACCC CGACCGAATC CGCCGCGGTC
GCGTCGGTCG CCGCGATCAT CGTCGGCTGG GCTTTCCACC GCGAGTTCGA TCCCTCGCAC
ATTCCGGGCA TGTTGGTGCG CCTGCTGGCC AGTTCGTCGA TGGTGCTGTT CCTGGTCGCC
ACAGCCAACG TGTTCGGCTG GATCATCGTC TACGAGAAGA TACCGCAGAA CCTGGCCGCC
TATCTGGTGA CGCTGACCGA GAACCCGATC GTGTTCATGC TGCTGCTCAA CGTGATGCTG
TTGCTGGTGG GCACCGTGAT CGACGCCATC GCGGCGCTGA TCCTGGTGGT GCCGATCATG
CTGCCGATCG CCATGCTGAG CTACGGGATC GACCCGTTCC ATTTCGGTGT CGCCGTCTGC
CTCAACCTCG TGATCGGCCT CTTGACCCCG CCGGTCGGCA CCGCGCTATA CGTGACCGCA
CAGGTGTCGA ACTGCAAACC GATGAGCATC ATGAAACCGC TCGCGCCTTT CCTTCTGGCG
GCGCTGGTGA TCCTTTTGCT GGTCTCGGTC TGGCCCGCGC TGACGCTGGT GTTGATCGAC
TGA
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| Protein sequence | MVPLSFGLLL FAGVPIALVL AITAMIYIWA SGNDVLFLSY PQQLYGGLEK YGLLAIPLFM
LVGELMNEGG ITKRLVKFAS VFVGSLRGGL AYINLVANMF MAAIIGSTNA QIAVMGHVMV
PEMVKRGYDR NFAAAVTAAG GLMSPIIPPS MLFVIYGVLA QISIGDMFIA GIIPGLLMGA
AFILVVVVLG FFYTYPTEAK LSRGMAVSHI LRALPSLSIP VVIIGGIAGG IATPTESAAV
ASVAAIIVGW AFHREFDPSH IPGMLVRLLA SSSMVLFLVA TANVFGWIIV YEKIPQNLAA
YLVTLTENPI VFMLLLNVML LLVGTVIDAI AALILVVPIM LPIAMLSYGI DPFHFGVAVC
LNLVIGLLTP PVGTALYVTA QVSNCKPMSI MKPLAPFLLA ALVILLLVSV WPALTLVLID
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