| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3670 |
|---|
| Symbol | |
|---|
| ID | 5714200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009955 |
|---|
| Strand | - |
|---|
| Start bp | 70773 |
|---|
| End bp | 71738 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641276588 |
|---|
| Product | CaCA family Na(+)/Ca(+) antiporter |
|---|
| Protein accession | YP_001541884 |
|---|
| Protein GI | 159046212 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0530] Ca2+/Na+ antiporter |
|---|
| TIGRFAM ID | [TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000078626 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGATACG ATCTTCTTCT TGTCGCGGTG GGCCTTGTTC TTTTGTTTGT GGGGGGTGAG
GGACTTGTGC GTGGTGCCGT AGCCATCGCC GAGCGTTTTG GCATATCTAA ACTTCTGATC
GGACTGGTGA TCGTCGGCTT TGGAACCTCG ACGCCCGAGC TTCTGGTTTC GGTCAATGCC
GCATTGGATG GCGCTCCGGA AATTGCCCTT GGCAATGTGG TTGGATCGAA CATCGCGAAC
ATACTGCTCA TTATTGGTAT AGCTGCTGCA ATCACGCCGG TCACGGGTTG GGATCGTGGC
GCGTTGCGTG AAGCGTTTGT TGCCACGCTT GTGGCTTTGG CCACTCTAGG GCTTGTTCAG
GCAGACGTGA TCAGCCGCTT GCACGGGACC GTAATGCTCG CGGTTCTCGC GGCCTATCTG
GTCTCGACGT ACTGGCTGGA ACGGCGAAAC CGGCAATCCC AAACCTTCGC GCATGAGGCC
GAAGCATTCG AAGATATCCC GATAACCCGC CCTTGGCAGG CTCCGCTTTT CGTGGTCGCT
GGTATCGCGG CCCTTGTGTT CGGGGCTGAC TTGTTGGTTC AGGGCTCGGT TTCGATTGCA
CGCGCCTACG GCGTCTCGGA TGCTGTGATC GGATTGTCGC TGGTTGCAAT CGGGACATCT
CTGCCAGAGC TTGCCACAGC TGTCGTGGCT GCGATCAAAC GGCAGTCCGA CGTCGTTCTG
GGTAACGTGA TCGGGTCCAA CATATTCAAT ATCCTCGCCA TCCTTGGCAT CACGGTTGTG
ATCCAGCCGA TGGATGTGGC CGCACGGTTC CGCGAGATTG ATACCCCCAT CATGGTCGCG
GCAAGTCTGC TTTTGCTGGG GCTTTTGTTC GCAACCCGCT CGATCGGGCG GACGTGGGGT
GTGCTCATGT TGACAGCCTA TGCCGCCTAT ATGGTCTTCC TTTTCTCGAC CGGAGCGACC
TCATAG
|
|---|
| Protein sequence | MGYDLLLVAV GLVLLFVGGE GLVRGAVAIA ERFGISKLLI GLVIVGFGTS TPELLVSVNA
ALDGAPEIAL GNVVGSNIAN ILLIIGIAAA ITPVTGWDRG ALREAFVATL VALATLGLVQ
ADVISRLHGT VMLAVLAAYL VSTYWLERRN RQSQTFAHEA EAFEDIPITR PWQAPLFVVA
GIAALVFGAD LLVQGSVSIA RAYGVSDAVI GLSLVAIGTS LPELATAVVA AIKRQSDVVL
GNVIGSNIFN ILAILGITVV IQPMDVAARF REIDTPIMVA ASLLLLGLLF ATRSIGRTWG
VLMLTAYAAY MVFLFSTGAT S
|
|---|
| |