| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3661 |
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| Symbol | |
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| ID | 5714191 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | + |
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| Start bp | 63298 |
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| End bp | 64170 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641276579 |
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| Product | integrase family protein |
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| Protein accession | YP_001541875 |
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| Protein GI | 159046203 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02249] integron integrase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.311976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000149049 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCAGAGC AACATATCCC ACCGCTGCGC CGCCGTTTTA TTGAAGATAT GCGGATCAAG
GGGCTGCAGC CAAAAACCCA GACGATGTAT TTGCGGGCGA TGCGCGATTT TACAGGGTTT
CTGGGGCATT CGCCGGATAG CGCGACACCC GAGGAATTGC GCGCGTTCCA GCTGGACATG
AAGGAGAAGG GCGTCGGCGC ACCGACCTTC AACAACCGGC TGACGGTTCT GAGTTTCTTC
TACGCGACCA CCTGCCCGCG TCCGGAGATG AAGCGGCACA TGCGGTATCA GAGGGCGGCG
AAGAAGATCC CGGTTGTGCT CAGCGCCGAG GAGGTCACCC GCATTCTCGA AGCGGCACCT
GGACCGGGGC TGAGATACCG GGCTGCCTTC AGCGTGGCCT ACGGTGGCGG GCTCCGAGCG
AGCGAGGTCA CACATCTCAA GATCGGCGAC ATCGACAGCG ACCGGATGCT GATCCGCATC
GACCAAGGCA AGGGCCGCAA GGATCGCCAC GTGATGCTGT CGCCGAGCCT GCTTGTGCTG
CTGCGCGATT ATTACCGCGA AGCACGGCCA GCGGGCTGGT TGTTCCCGGG CCGCAACCGG
GTCGACCCGA TCTCGACGCG GCAGTTCAAC CGGGCCTTCG GAGTGGCCTG TGATTTTGCA
GAGATCAAGA AGCGGGTCTC GCCCCATACG CTGCGACACA GCTTTGCCAC GCATCTGCTG
GAGGGAGGGA CGGATATCAG GGTGATCCAG GTGCTGCTGG GCCATGCCAA GCTGGAGACC
ACAACGATTT ATACCAAGGT GGCGATCAAG ACGATCCGGG ATGTGACCAG CCCGCTCGAC
CTGCTGGTGC GACGGGAGGC CGGTGCCGGA TAG
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| Protein sequence | MSEQHIPPLR RRFIEDMRIK GLQPKTQTMY LRAMRDFTGF LGHSPDSATP EELRAFQLDM
KEKGVGAPTF NNRLTVLSFF YATTCPRPEM KRHMRYQRAA KKIPVVLSAE EVTRILEAAP
GPGLRYRAAF SVAYGGGLRA SEVTHLKIGD IDSDRMLIRI DQGKGRKDRH VMLSPSLLVL
LRDYYREARP AGWLFPGRNR VDPISTRQFN RAFGVACDFA EIKKRVSPHT LRHSFATHLL
EGGTDIRVIQ VLLGHAKLET TTIYTKVAIK TIRDVTSPLD LLVRREAGAG
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