| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3655 |
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| Symbol | |
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| ID | 5714185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | - |
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| Start bp | 55361 |
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| End bp | 57364 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641276573 |
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| Product | TRAG family protein |
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| Protein accession | YP_001541869 |
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| Protein GI | 159046197 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.291322 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000244512 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGGAAAAG CGCGGATCGC CACAGGGGTC TTTCTGGTAA CGCTGGTGAC CGGGGCTATG
GGCTATACCA TCGCCTCGGC GGTGCTGACC TACCAGGATC TCGGGTTCGG GGCCGAGATC
GACTTTGCCT ATATCGCGCA GAACTACATG GCGATCCTCG ATCGCCGCCC GGAGGATGCG
CAACTTATTC ACCTGATCAT CGGCAGCTTC GCCGCCGCCG GGCTGATGCT GAGCCTCGCC
CTCTCAGGGT CCGCCCTGAC ACGCTTTGGC CAGACCCATT GGCAGACCGC GCGCGAGATG
AAGGCCAATG GGTTCTTCGG GGCGCCCGGC ACCGGGTTCA TCCTCGGCAA GCTGGGGCCG
CCGGGCTCCC GCGCCAATTA CATTTGCTCG AAGGTTTTTC CGCATGCGCT GATCGTGGCC
CCCACGGGCC GAGGCAAGAC CACGGGCTTC GTCATCCCGA ACCTGCTGAC CTGGCAAGGC
TCCGCCGTGA CGCTCGATGT GAAGGGCGAG TGCTTTGAGG CCACGGCCCG GCACCGCGCC
GCCCAAGGCG ACAAGGTCTA TCGCTTTGCC CCCACCGATT GGGAGGGCAA GCGCACGCAT
CGTTACAACC CGCTCTTGCG CATCTATCAA CTGAAAGACC CCGCCCGCCA GCAGATGGAA
TTGCAGCTCC TGGCGACGCT CTTCCTGCAG AGTGACAACG ACCGGGTGCA GGGCCTCCTC
AAAGGCGGAA TCGATCTCTT CGTGGCGGCA GGCCTGCTGG CCTTCCAGCG CAAGCGCCCC
ACCTTGGGCG AGATCTACCG CATCGCCGCC TCGGGCGGAA ACAAGCAGAA GGAGTATTTC
GCGCGGGGCC ACGAGGTCGA CAACAGGGCC GCCAAGTTGA TCTTCACGCG GCTGGCCTCA
ACCAACAACG ATACGCTGAC CTCCTATGTC TCGCTCCTGA TGACATCGGG GCTCGATCAA
TGGCAGAACC CGGCCATCGA TGAGGCGACG GCGGTGTCGG ACTTTGATTT CCGGACGATC
CGCAAGAAGC CCTTCTCGGT CTATCTGGTG GTCCAGCCGC TGATGGTGAA GCCGCTGGCG
CCGCTGATCC GGCTCTTCTT CTCCGATCTT CTCTCCGCCA TGCAGGAAAA GGATCCCGGG
CCGGATGAAC CCTGGCCCGT GATGATCATG CTCGACGAGT TCAATCGCCT TGGCAAAATG
CCCATTGTGG TAGAAAGCAT CGAGACCCTG CGCACCTATC GTGGTCACCT CGCCGTGGTC
ACCCAAACCA TCCCCGCCCT CGATGAAATC TACGGCGAGA ACACCCGTCG AGCCCTGCAG
GGCAACGCGG GCGTGAAGCT CTATCTGACG CCCTCCGATG AAAAGACCGT CGAGGAGCTG
AGCAAAGCGG TCGGCAAGAC CACGAAGACC GTCGTCACGC GCTCGCAGTC CATCGGCAAG
AACCCCTTTG AAGGGCGCAG CCAATCCACG CGGACTGAAG AGAGCTCGTT GTTGCCCGAA
GATGAGGCGC GCCGCCTGCC GCTCGATGAA ATCGTCATGG TCATCGATGC CCAGATGCCG
GTCCGTGCAA AGCGGATCCA GTACTTCGAT GATCGGCTGT TCAAGGCGAT CCACGCGGCG
CAGACAGGGG AGTTGCCGTT TCCGGAGCCG GGGGGAGGGG GGCCGCAAGG CACGCTGCCG
CTGAGCATGC GCGCCATGCC GATGACACCG CCCGCGAACG GACCAGGTGG GTCTGACGCC
GTTGTGGAGA CCACACGCCA AGAAGCGGGC AGTCAACCGT CAGGGCAAAC CGACGTCGCC
CTAAAAAAGA CCGCGCCCGT CGTTCTAGCC GTTATCGCCG AGGAACAGCG ACAGATGGAA
ATGGATTTTG GGGGCCAGGT TGCGGATGCC GAGACAGTGG GCGTGGATGA TGAAGCTCAG
TTGCGCTCTG CTGTCGATGG CTTGGACGAC ATGGAGGCGA TGCTGCAGGA GGGCGATGGC
GGTGAAAAGC TGGTTGCTCG ATAG
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| Protein sequence | MGKARIATGV FLVTLVTGAM GYTIASAVLT YQDLGFGAEI DFAYIAQNYM AILDRRPEDA
QLIHLIIGSF AAAGLMLSLA LSGSALTRFG QTHWQTAREM KANGFFGAPG TGFILGKLGP
PGSRANYICS KVFPHALIVA PTGRGKTTGF VIPNLLTWQG SAVTLDVKGE CFEATARHRA
AQGDKVYRFA PTDWEGKRTH RYNPLLRIYQ LKDPARQQME LQLLATLFLQ SDNDRVQGLL
KGGIDLFVAA GLLAFQRKRP TLGEIYRIAA SGGNKQKEYF ARGHEVDNRA AKLIFTRLAS
TNNDTLTSYV SLLMTSGLDQ WQNPAIDEAT AVSDFDFRTI RKKPFSVYLV VQPLMVKPLA
PLIRLFFSDL LSAMQEKDPG PDEPWPVMIM LDEFNRLGKM PIVVESIETL RTYRGHLAVV
TQTIPALDEI YGENTRRALQ GNAGVKLYLT PSDEKTVEEL SKAVGKTTKT VVTRSQSIGK
NPFEGRSQST RTEESSLLPE DEARRLPLDE IVMVIDAQMP VRAKRIQYFD DRLFKAIHAA
QTGELPFPEP GGGGPQGTLP LSMRAMPMTP PANGPGGSDA VVETTRQEAG SQPSGQTDVA
LKKTAPVVLA VIAEEQRQME MDFGGQVADA ETVGVDDEAQ LRSAVDGLDD MEAMLQEGDG
GEKLVAR
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