Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3648 |
Symbol | |
ID | 5714178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009955 |
Strand | + |
Start bp | 47589 |
End bp | 48575 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641276566 |
Product | type II secretion system protein E |
Protein accession | YP_001541862 |
Protein GI | 159046190 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0223544 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGCTGA GCTATCTCGA AACCTCGCTC GACCGGATCG ACGCCGCCGC CCGCGACGAT GTCATCGAGA TCTGCATCAA CCCCGACGGG ACCTGCTGGG GAGAATTCCA GGGTGATCAC TTCATGCGCG CGCTGGACCA GAGGCTGACG GGCGTTCAGG TCCGAGACCT CGGCAACCAG ATCGCCTCCT CGGCAAATAC CACCATGAGC AAGGACCGTC CCATCGTCTC GGTTTCGATC ACCTATAAGG GTCGCCCGAT CCGGGCACAG GTCATCACCC CGCCCGCCGT GCTCTCGGCC ATGTCGATCA GCTTGCGGTT CTTCTCGAGC CTGCCGCTCG AGGGCATTGC GCTCGACTTT CTCTATGGCA AAGAGCGCAA GCTCGAAGAC CTGCGCGTCG AAAAAAAGCG CGCCTTGCGC GCCGTGGTGG CTGCCGGATT GATCGATGAT GCGCTTGCCT TCTGCGTCGA GAACAAACTC AACATGATTG TCTCGGGCGG CACCTCCACC GGCAAAACCG TAGCCGCGCG CAAGATCCTC TCTCACGTAC CGGCCGAAGA ACGCATTGTC ACCATAGAGG AAGCGGCCGA GCTTCTGCCG ACCCAGCCAA ATGCCGTGAC CCTCATCGCC AATCGCGACA CAGAATTCCA GTCCGCCGAT GTGCTTCTCA CCGCCACGCT GCGCATGCGC CCCGACCGGA TCATCCTGGG CGAGGTGCGC GGCAAGGAGG CCATGACCTT CCTCGAAGCC ATCAACACCG GCCATGGCGG GTCCATGACC ACACTGCATG CCGAAACCCC GCAACTCGCC GTGCAGCGGC TCGCGATCGC GGCACTCAAG ACCGAAATCC CGATGACCTA TGCCGACATG ATCCAGTACA TCGAGAATTC CATCGATGTG ATCATCCAGG CCGGTCGCCA TGACGGAAAA CGCGGCATCA CCGAATTCTA CCTCCCCGGC GCAACTGAGA TTGGAATTTC CCCATGA
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Protein sequence | MSLSYLETSL DRIDAAARDD VIEICINPDG TCWGEFQGDH FMRALDQRLT GVQVRDLGNQ IASSANTTMS KDRPIVSVSI TYKGRPIRAQ VITPPAVLSA MSISLRFFSS LPLEGIALDF LYGKERKLED LRVEKKRALR AVVAAGLIDD ALAFCVENKL NMIVSGGTST GKTVAARKIL SHVPAEERIV TIEEAAELLP TQPNAVTLIA NRDTEFQSAD VLLTATLRMR PDRIILGEVR GKEAMTFLEA INTGHGGSMT TLHAETPQLA VQRLAIAALK TEIPMTYADM IQYIENSIDV IIQAGRHDGK RGITEFYLPG ATEIGISP
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