Gene Dshi_3648 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3648 
Symbol 
ID5714178 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009955 
Strand
Start bp47589 
End bp48575 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content61% 
IMG OID641276566 
Producttype II secretion system protein E 
Protein accessionYP_001541862 
Protein GI159046190 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0223544 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCTGA GCTATCTCGA AACCTCGCTC GACCGGATCG ACGCCGCCGC CCGCGACGAT 
GTCATCGAGA TCTGCATCAA CCCCGACGGG ACCTGCTGGG GAGAATTCCA GGGTGATCAC
TTCATGCGCG CGCTGGACCA GAGGCTGACG GGCGTTCAGG TCCGAGACCT CGGCAACCAG
ATCGCCTCCT CGGCAAATAC CACCATGAGC AAGGACCGTC CCATCGTCTC GGTTTCGATC
ACCTATAAGG GTCGCCCGAT CCGGGCACAG GTCATCACCC CGCCCGCCGT GCTCTCGGCC
ATGTCGATCA GCTTGCGGTT CTTCTCGAGC CTGCCGCTCG AGGGCATTGC GCTCGACTTT
CTCTATGGCA AAGAGCGCAA GCTCGAAGAC CTGCGCGTCG AAAAAAAGCG CGCCTTGCGC
GCCGTGGTGG CTGCCGGATT GATCGATGAT GCGCTTGCCT TCTGCGTCGA GAACAAACTC
AACATGATTG TCTCGGGCGG CACCTCCACC GGCAAAACCG TAGCCGCGCG CAAGATCCTC
TCTCACGTAC CGGCCGAAGA ACGCATTGTC ACCATAGAGG AAGCGGCCGA GCTTCTGCCG
ACCCAGCCAA ATGCCGTGAC CCTCATCGCC AATCGCGACA CAGAATTCCA GTCCGCCGAT
GTGCTTCTCA CCGCCACGCT GCGCATGCGC CCCGACCGGA TCATCCTGGG CGAGGTGCGC
GGCAAGGAGG CCATGACCTT CCTCGAAGCC ATCAACACCG GCCATGGCGG GTCCATGACC
ACACTGCATG CCGAAACCCC GCAACTCGCC GTGCAGCGGC TCGCGATCGC GGCACTCAAG
ACCGAAATCC CGATGACCTA TGCCGACATG ATCCAGTACA TCGAGAATTC CATCGATGTG
ATCATCCAGG CCGGTCGCCA TGACGGAAAA CGCGGCATCA CCGAATTCTA CCTCCCCGGC
GCAACTGAGA TTGGAATTTC CCCATGA
 
Protein sequence
MSLSYLETSL DRIDAAARDD VIEICINPDG TCWGEFQGDH FMRALDQRLT GVQVRDLGNQ 
IASSANTTMS KDRPIVSVSI TYKGRPIRAQ VITPPAVLSA MSISLRFFSS LPLEGIALDF
LYGKERKLED LRVEKKRALR AVVAAGLIDD ALAFCVENKL NMIVSGGTST GKTVAARKIL
SHVPAEERIV TIEEAAELLP TQPNAVTLIA NRDTEFQSAD VLLTATLRMR PDRIILGEVR
GKEAMTFLEA INTGHGGSMT TLHAETPQLA VQRLAIAALK TEIPMTYADM IQYIENSIDV
IIQAGRHDGK RGITEFYLPG ATEIGISP