| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3647 |
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| Symbol | |
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| ID | 5714177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | + |
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| Start bp | 46205 |
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| End bp | 47584 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641276565 |
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| Product | conjugation TrbI family protein |
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| Protein accession | YP_001541861 |
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| Protein GI | 159046189 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0441061 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATA CCGAGAATAC CGAGCTGGAA AAGCGCCTCG CCGCCCTGGA GAAAGGCAGT
GCCCGGGCCC CCATAGCGGC GCAGCGCCGG TCGCCCCTTC TCGCGCTGAT CGTGATCCTC
GTCATCGGCG CGGGTGGTGC CCTGCTTTAT CTCCTCTCAC AGCCCGACGA AGAGGAAGCC
TTGCCGACGG CCACCCCGGA CGTCTTCCAA AACGAGGGGG ACGGCTTTGG CGCCATCGAG
ACCTTGCCCC CGCCCGAGCC CGAAGTGGTG TTCGTCGCAC CCGATCCGGT CGAGCCCAAT
GTCGAGCTTC TGGCGCAGAT CACCGCCCTG CAGGCCCAGA TCGAAGAATT GCGCAACGCC
CCCGAGGCGG TCGTCGAGGA AGACACCGCC GCCGCAGAGG CGATCGACGC GCTGACCGCT
CAGATTGCGG CGCTACAAGC CGCCTCGGAA GCAGCACAGC AACGATTTCA GGACGAACTG
ACGGCGCGGG ATCGCAGCCT TGAGCAACTC CGCATGGATC TGGAATTGGC CCAACTCGAG
GCCAGCCGAC CCCAACCCGC GCCAACGGGC CCCACGGAAG ATGAGCTGCG CGCGCGCGAG
CAAGAGCGAC TGCGCCGCGA GGAAGAAGCC CGGCGCATGG CCGAGCTGGA GCGCCGCGCC
GCGGAGGAAC GCGCCTTCCA GGAGCGGCGC ATCACCTCGC CCACCATCGC GTTTGGCGGT
GCCTCCGGAG CGAATGAAAC GGCTCTGACC GAACGCACTT TTGGCGAGGT GACGGATTTC
GTGCTGAACG GGGCGCTGCC CTCGACGGTG ACGCAGGCCG AGGTGATCGC CAATCCTTCC
AACACCATCA TCCAGGGCAC CATGATCCAA GCCGTCATGG AAACTGCCCT TGACAGCTCC
CTGCCCGGCC AGACCCGTGC CGTGGTGTCC GAAGATGTCT ACAGCGTCGA TGGCGTGCGC
CTCCTGATCC CGCGCGGATC GCGTCTCATT GGGCGTTACC GCGCTGGCGT CGATATCGCG
CAGCGCCGCG TCACGATCGC CTGGGACCGG ATCATCCTGC CCGCGGGCCA GACCGTCCAG
ATCAGCTCCT TCGGAGGTGA TGAACTGGGC CGTTCTGGCG TCACCGGCCT CATAGACACA
CGCTTCGCCG AGCGTTTCGG GTCGGCCGCC CTGATCTCGC TTATTTCGGC AGCACCTGGT
GCCGCCGCCT CCGAGGTCCA GGATGAGACT GCCGCCGACG CTCTCGAAGA CGTTGGCGAT
GATCTGGCAG ATGCGACCGA CAGCGTCATA GGCGATTACC TCTCCATCGG CCCCGTCATC
TATGTCGACC AGGGCGCGCG CGTCACCGTC ATGGTCGACC GCGATCTGGA GATATTCTGA
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| Protein sequence | MSDTENTELE KRLAALEKGS ARAPIAAQRR SPLLALIVIL VIGAGGALLY LLSQPDEEEA
LPTATPDVFQ NEGDGFGAIE TLPPPEPEVV FVAPDPVEPN VELLAQITAL QAQIEELRNA
PEAVVEEDTA AAEAIDALTA QIAALQAASE AAQQRFQDEL TARDRSLEQL RMDLELAQLE
ASRPQPAPTG PTEDELRARE QERLRREEEA RRMAELERRA AEERAFQERR ITSPTIAFGG
ASGANETALT ERTFGEVTDF VLNGALPSTV TQAEVIANPS NTIIQGTMIQ AVMETALDSS
LPGQTRAVVS EDVYSVDGVR LLIPRGSRLI GRYRAGVDIA QRRVTIAWDR IILPAGQTVQ
ISSFGGDELG RSGVTGLIDT RFAERFGSAA LISLISAAPG AAASEVQDET AADALEDVGD
DLADATDSVI GDYLSIGPVI YVDQGARVTV MVDRDLEIF
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