Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_3646 |
Symbol | |
ID | 5714176 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009955 |
Strand | + |
Start bp | 45513 |
End bp | 46208 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641276564 |
Product | conjugal transfer protein TrbG/VirB9/CagX |
Protein accession | YP_001541860 |
Protein GI | 159046188 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0387032 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATCAATA AGTTCTTTGT TGCTGCCATA TTTGTTTTGC TGCCCGGCCT TGCCTTTGCC GAAGCGATCC CGCGCGGTGG TCCCAACGAC AGCCGGGTGC GCTTGGCCAC CTACCAGGAG GGTCAGGTCT ACCGTCTCAG CGTCTCGCTC ACCCATGTGA CCACCATCGA GTTCGGCGAG GGCGAAAGCA TCCGCTCGAT CATCGCGGGC GACACCGAGG GCTTCGAGAT CGATGGCGTG CCGGGCGGCC AGGCCTTCGC GATCAAGCCC GTCGCGCGCG GTGTCCATAC CAATGTGACG GTCTACACGA ACAGGCGAAG CTACTATTTC AACGTCGAGG AGGTTCGCAG CCCGACCTTC TATGTGGTTC AGTTCCGCTA TCCTGATGAC GCTGGGCGCC CGACTCGAGC CATCGCCGCC CAAGCGCCGA ACTACAACTA CGGTGCCAGC GCGCGGACCG AGTTCACGCC AACCCGCATC TGGGATGACG GGACGTTCAC GTATTTCGCG TTTCCAAGAA ACGCGCCTGT GCCCGCGATC TTCCGCTACG CGGGCGGCCG CGAGCGCACG GTCAACACGC AAACTCCTGA AGACGGCGTG ATCCGCGTCA GCGGCGTGAA CCGCCAATGG GTCCTGCGAC TGGGCGAAGA GGTGGTCTGC ATCGAGGCGA TCCCGCCCGC GGAGGCCGCC TCATGA
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Protein sequence | MINKFFVAAI FVLLPGLAFA EAIPRGGPND SRVRLATYQE GQVYRLSVSL THVTTIEFGE GESIRSIIAG DTEGFEIDGV PGGQAFAIKP VARGVHTNVT VYTNRRSYYF NVEEVRSPTF YVVQFRYPDD AGRPTRAIAA QAPNYNYGAS ARTEFTPTRI WDDGTFTYFA FPRNAPVPAI FRYAGGRERT VNTQTPEDGV IRVSGVNRQW VLRLGEEVVC IEAIPPAEAA S
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