Gene Dshi_3646 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3646 
Symbol 
ID5714176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009955 
Strand
Start bp45513 
End bp46208 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content63% 
IMG OID641276564 
Productconjugal transfer protein TrbG/VirB9/CagX 
Protein accessionYP_001541860 
Protein GI159046188 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0387032 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATCAATA AGTTCTTTGT TGCTGCCATA TTTGTTTTGC TGCCCGGCCT TGCCTTTGCC 
GAAGCGATCC CGCGCGGTGG TCCCAACGAC AGCCGGGTGC GCTTGGCCAC CTACCAGGAG
GGTCAGGTCT ACCGTCTCAG CGTCTCGCTC ACCCATGTGA CCACCATCGA GTTCGGCGAG
GGCGAAAGCA TCCGCTCGAT CATCGCGGGC GACACCGAGG GCTTCGAGAT CGATGGCGTG
CCGGGCGGCC AGGCCTTCGC GATCAAGCCC GTCGCGCGCG GTGTCCATAC CAATGTGACG
GTCTACACGA ACAGGCGAAG CTACTATTTC AACGTCGAGG AGGTTCGCAG CCCGACCTTC
TATGTGGTTC AGTTCCGCTA TCCTGATGAC GCTGGGCGCC CGACTCGAGC CATCGCCGCC
CAAGCGCCGA ACTACAACTA CGGTGCCAGC GCGCGGACCG AGTTCACGCC AACCCGCATC
TGGGATGACG GGACGTTCAC GTATTTCGCG TTTCCAAGAA ACGCGCCTGT GCCCGCGATC
TTCCGCTACG CGGGCGGCCG CGAGCGCACG GTCAACACGC AAACTCCTGA AGACGGCGTG
ATCCGCGTCA GCGGCGTGAA CCGCCAATGG GTCCTGCGAC TGGGCGAAGA GGTGGTCTGC
ATCGAGGCGA TCCCGCCCGC GGAGGCCGCC TCATGA
 
Protein sequence
MINKFFVAAI FVLLPGLAFA EAIPRGGPND SRVRLATYQE GQVYRLSVSL THVTTIEFGE 
GESIRSIIAG DTEGFEIDGV PGGQAFAIKP VARGVHTNVT VYTNRRSYYF NVEEVRSPTF
YVVQFRYPDD AGRPTRAIAA QAPNYNYGAS ARTEFTPTRI WDDGTFTYFA FPRNAPVPAI
FRYAGGRERT VNTQTPEDGV IRVSGVNRQW VLRLGEEVVC IEAIPPAEAA S