| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3641 |
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| Symbol | |
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| ID | 5714171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | + |
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| Start bp | 40348 |
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| End bp | 42723 |
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| Gene Length | 2376 bp |
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| Protein Length | 791 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641276559 |
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| Product | CagE TrbE VirB component of type IV transporter system |
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| Protein accession | YP_001541855 |
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| Protein GI | 159046183 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.227146 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCGTG ATGACACACG TGATGCTGCG CTCGACCCCC GCACAATGAC GCCGGACTGG
TACGCGCGCG AGACCCGGCT TGCGCATATG CTGCCCTATG TGAGCCTCGT CGACGACCAG
ACCGTGCGGA CACGGGTGAA CGAACTCTTC CGCTGCATCC GGCTCGAGGG GATCAACAGC
TACACGATGG ACGATGCCTA TCTCGACAAG GTGACGGCGC TTTTTGCCCG CATCGTCGCG
CAGCTTGGGC CGGAATTCAG CTATTACGTC CACAAGGTCT CCAAGGCGAT CAAACCGGAT
CTGGACCCAA TTGGTGAGGA CAGCTTCGCG GGCGAGGTTG ACCGGCGTTG GCGCGCGAAA
CTCGAGACCA GCGGGCTGCG CGACAAGACG CTGACGCTCA CCGTCATTCA CCGCCCGCCC
CCGAAAAGCC TCCTGCCGCA TCTCGGCCGC AGCGCGCCGG ACCGGCTGAA GGAAGAGACC
CGCAAACGCC AGCAGCGCCT CGGTGAGGCC GTGAACGTCT TCCTCTCTGG CCTCACCGAG
CTCAAGCCGC GCCTGCTGTC AGCCGGATCG GGAGAGTTGG TGGGATTTTT GGGCGCGCTC
AACACGGGCA CCGAGCTGCC GCTCTACCCG GCCAACACCT ACGGCTTTCT GTCCTTCAAC
GTCGCCAATA CCCGCGTGAC GTTTTACGGC GACCATTTCG AGCTTTCCGA GGGCGTCGTG
GGCCACCGCT ACGGCAAGAG CTTCACCATC GGAGAATACT CGGAAGGCAC CTCCTGCACC
ATGTTCGACA TGCTGAACCT GCCGGTCGAC ATGATCGTGA CGCACTCCTT CACGCCGATC
AATTCGAACC TCATGGCGGG CCGCATCAAG CGGCAAAAGC GCCAGATGCA GGCCAGCCAG
GACGCAGCCC TCTCGCTCCT GGAAGCCCTG GACATCGCCG CCGATGATCT CGAGGCCAAG
CGCCAAAGCT TCGGCGAGCA TCACATGGTC GTGACGCTCT TTTGCGACAC GCTCGAAGAA
CTGCAAACCC TCAGCGCCGA GATCGTGAAC GCCGCCGCGA CCGAAGGCGT GAAGATGATT
GGCGAGCGGG TCGCGGCCAA GGCGCATTAC CTCAGCCAGC ACCCCGGCAA CCAGCCAAAG
CGCGTCCGCG CCAGCGCCGT CACCAACCGC AACTTCGCGG ATTTTGCGGC CTTCCACCGG
ACACAGCTCG GCAAACCTGC AGCACTTACC CCCTGGGGCC GGGTCGTCAC CTATTTGCCC
ACGCCGGAGC AGAGCGCCTA CCGGTTTTCT TATCACGAGC AGGGCAGCCC TTCCAGCGAA
CCGACCAGCG GGCATACCCT GATCATGGGA CGGCCCGGGT CGGGCAAATC AGTGCTGTCG
GCCTTTCTGA TGACCCAAGC CCGTCGCGCA GGGGCGCGGG TCTTCGTCTT CGACTACCGT
CTCGGTATGG AGATGGCGGT CCGCGCCAAT GGCGGGCGCT ACGCGTCCCT GAACGCCGGC
CAGCCCACGG GTCTCAATCC GCTCTGGACA GAGACCGATG CGCGCGGCAC CGCTTGGCTC
TCGGACTGGC TTGCCACGCT GCTCTACCGC GCCGACAAGC CGCTGACCCC TGCGCAGACC
AACCGCATCC AGGAAGTGGT GCGCCAAAAC GCGCAGGCCT CCAGTCCGGC CCTGCGGAAC
TGGCAGGATT TCGCATCGCT TTTTGTGTCC ACCGATGATG GCGGCGATCT GCACCAGCGC
CTGCTCGAGT GGACCGAAGA CGGCCGCTAC GGCTGGATCT TCGGGCAGAG CCTCGAGGAC
ACGTTCTCGC TCAAGGGCGA TGTCGTGGGC TTCGATCTGA CCGGCATTCT CGACAGCGAG
GCCGACAAGG AACGGATGGC GGTCCTGTCC TATCTTTTCC GCCGGGTCGA ACGCGAGATC
GAGGATCGCC GCCCCACCAT CATCGTGATC GACGAGGCAT GGAAGGCCCT CGATAACGCG
TATTTCGCCG AGCGGCTGTC GAACTGGCTG GTGACCGCGC GCAAGCAGAA CACGGTTGCC
GTGATGATGA CGCAATACGC GAGCCAGCTC GAGCGCACCC GGACCGGCAA GACCATCATC
GAGGCGGTGC CGACGCAGAT CCTGCTGCCC AATATCCGCG CGCAGCCTGC GGACTACGCC
ATGCTGAACC TAACGGAGAA GGAGCTCGAC GTCCTTCTCA ACACCGGCAG CGACAGCCGC
CTCGCGCTCA TCCGCGATGA CCAGGGCTCG ATCGTCGTCG ATGCCGATCT GAGCGCCCTC
GGGCCCAATC TCACCATCAT GGGCGGCATG GAGAAAGGCG AGGCGCTCGT CGGCGCTGAT
TACCGCGACC GCCCGGACTT CTGGAGGCTT TCATGA
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| Protein sequence | MPRDDTRDAA LDPRTMTPDW YARETRLAHM LPYVSLVDDQ TVRTRVNELF RCIRLEGINS
YTMDDAYLDK VTALFARIVA QLGPEFSYYV HKVSKAIKPD LDPIGEDSFA GEVDRRWRAK
LETSGLRDKT LTLTVIHRPP PKSLLPHLGR SAPDRLKEET RKRQQRLGEA VNVFLSGLTE
LKPRLLSAGS GELVGFLGAL NTGTELPLYP ANTYGFLSFN VANTRVTFYG DHFELSEGVV
GHRYGKSFTI GEYSEGTSCT MFDMLNLPVD MIVTHSFTPI NSNLMAGRIK RQKRQMQASQ
DAALSLLEAL DIAADDLEAK RQSFGEHHMV VTLFCDTLEE LQTLSAEIVN AAATEGVKMI
GERVAAKAHY LSQHPGNQPK RVRASAVTNR NFADFAAFHR TQLGKPAALT PWGRVVTYLP
TPEQSAYRFS YHEQGSPSSE PTSGHTLIMG RPGSGKSVLS AFLMTQARRA GARVFVFDYR
LGMEMAVRAN GGRYASLNAG QPTGLNPLWT ETDARGTAWL SDWLATLLYR ADKPLTPAQT
NRIQEVVRQN AQASSPALRN WQDFASLFVS TDDGGDLHQR LLEWTEDGRY GWIFGQSLED
TFSLKGDVVG FDLTGILDSE ADKERMAVLS YLFRRVEREI EDRRPTIIVI DEAWKALDNA
YFAERLSNWL VTARKQNTVA VMMTQYASQL ERTRTGKTII EAVPTQILLP NIRAQPADYA
MLNLTEKELD VLLNTGSDSR LALIRDDQGS IVVDADLSAL GPNLTIMGGM EKGEALVGAD
YRDRPDFWRL S
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