| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3638 |
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| Symbol | |
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| ID | 5714168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009955 |
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| Strand | + |
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| Start bp | 39177 |
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| End bp | 39797 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641276556 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001541852 |
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| Protein GI | 159046180 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.237 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTACTGG TCATGGAGAG CGATGGCTCT CTGACCCCTT CTCGCTCCCA GGACAGCTTT
GCCCGCAATT ACCATGACGG CATCGGCCAG GGATCGGCAG CCGATGAACT TGCGATTTTC
GGCAGCGATG AAACTGTGCC AGAGCGTGAA GCGATGCGCT TTGCAGCCCG TGTCGGGCCG
GCACCCCTGC CCCACCCCGA TGTCCTAAAC GCCATAGAGA CCACGGCCCT GCGCTATGCC
AGCCACCCCG GCCTAAGGCG CGCGGAGCTT TCCGTCACGG ACTGGCTGAG CCTCTACCGC
GCCAATATCG AAGTGGAGAG CGCATATCGG CAGGATGCGG TCTCCCGTGC GGGCGCCATT
GGCCTTGGTC AGCTTATGCC CGACACCGCG CGCGACCTCG GCGTCGACCC GCGCGATCCA
CAACAGAACC TCGACGGTTC CGCTCGCTAC CTTGCGATGA TGCTGGAAAG CTTCGGCGAT
CCGCATCTGG CGCTTGCCGC CTACAACGCT GGGCCGGAAG CCGTGCGCCA ACACGGTGGC
ATTCCCCCTT ACCGAGAAAC CCAGAACCAC GTGGCCCGCG TCATGGCCGT TGTGGCCCGA
TTGGAAGGAT CAAATTCATG A
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| Protein sequence | MVLVMESDGS LTPSRSQDSF ARNYHDGIGQ GSAADELAIF GSDETVPERE AMRFAARVGP
APLPHPDVLN AIETTALRYA SHPGLRRAEL SVTDWLSLYR ANIEVESAYR QDAVSRAGAI
GLGQLMPDTA RDLGVDPRDP QQNLDGSARY LAMMLESFGD PHLALAAYNA GPEAVRQHGG
IPPYRETQNH VARVMAVVAR LEGSNS
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