| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3624 |
|---|
| Symbol | |
|---|
| ID | 5714154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009955 |
|---|
| Strand | + |
|---|
| Start bp | 25911 |
|---|
| End bp | 26531 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641276542 |
|---|
| Product | cation efflux protein |
|---|
| Protein accession | YP_001541838 |
|---|
| Protein GI | 159046166 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1230] Co/Zn/Cd efflux system component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.383775 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAGC AGAGAAACGC AACGGAAAGA CGCACACTCT GGATCGTGCT GGGTCTCAAC
ATCGGGCTGG CAGTCGCTTT CTTCGCCTCG GGCGCATTCG GCGAGTCAAG CGCGCTTATC
GCCAATGGCC TCGACAATCT GTCGGACAGT TTCGTCTACG CGATCAGCCT CTTCGCGCTG
TCCCGCTCCG CCAAGTGGAA GCGCGGAGCG GCGAACGTTT CGGGCGGCCT GCTGATCCTC
TTCGCCCTTG GAATCCTGTA TGACGCGTGG CGCCGCTACG TCGGCGGATC GGATCCTCTT
GGCACGATCA TGATTGTCAT GGCGCTGGTA GCGGCGGCCA TCAACGCACT TTGCGTCTGG
CTGCTGGCAC GGCTTCGCGA TCCAGACGTA AACATCCGAG CGGCGAATAC GTTCAGCTGG
AACGACTTCG CGGCCAATCT CGGAATCGTC GTCGCAGGCG GGCTCGTAGC CTGGCTCGGA
ACGAATTGGC CGGACCTTGT CGTGGGCGTG ATTGTCGCCG GCATCGCGGC CTGGGGTGGC
GTCGGAATCC TGAGAGACGC GCATGGTGAA CACCACAAGG CGGTGCACAA TGACGATCAG
GTAACCAAGG ACTCGGCCTG A
|
|---|
| Protein sequence | MAEQRNATER RTLWIVLGLN IGLAVAFFAS GAFGESSALI ANGLDNLSDS FVYAISLFAL
SRSAKWKRGA ANVSGGLLIL FALGILYDAW RRYVGGSDPL GTIMIVMALV AAAINALCVW
LLARLRDPDV NIRAANTFSW NDFAANLGIV VAGGLVAWLG TNWPDLVVGV IVAGIAAWGG
VGILRDAHGE HHKAVHNDDQ VTKDSA
|
|---|
| |