| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1918 |
|---|
| Symbol | |
|---|
| ID | 5709300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1995869 |
|---|
| End bp | 1997008 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641276426 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001541725 |
|---|
| Protein GI | 159042473 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCGC TTCTTGAGGA GGTTCATGAA TTATTAAGGA GGAGTACAGT GGAGTTCGCG
GAGGCTAGGG TTGAGCCATT GGCTAAGGCC ATTGAGGTTA ATGGTGAGTA CCCAAGGCAA
CTAATGGGGG AGTTGGGTAA GCAGGGCTTA CTTGCCCCCA TGGCTCCACC AGAGTACGGT
GGGGGTGGCT TAGACTTTAG GGGTGAGGTG ATTATTATTG AGGAGGTTGC TAAGCACTCC
CCAACCCTGG CAACATTAAT GGAGGTTCAG GGAGCCTTAA TAATTGATTC ACTTTTAAGC
CATGGTAGCC GGGAGGTGAG GGAGAGGTTC CTTGAGGGTT TAGTTAAGGG TGATTTAATA
GCCTCCTTCG CCTTAACCGA ACCCTGCTGC GGTAGTGATG CTGGGGCTAT TGAGACAAGG
GCTGTTAAGG ATGGGGGTGA GTGGGTTATT AATGGGCGTA AGGCATGGGT AACCAGCGGC
CAATACGCCG ACCTATACCT AGTCTTCGCC AGAACCGGTA GTATTGAGGA GAGGCATAGG
GCTATTACAG CATTCCTAGT GCCTAGGGGT GGTTGCATTG AGGTTAACCC CATGGGTGTA
ATGGGGATTA GGGGCGGCGG CACCGCTGAG GTTTCCCTAA GGGACTGCAG GGTGCCTGAT
GAGTACAGGG TTGGGGAGGT TAATAGGGGT TTTTACTTAG CCATGGAGAA GCTTAACCTG
GGTAGGACTT GTGTTGGGGC TATTGGCTTA GGTATAGCTG AGAGAGCCTT CACTGAGGCT
TATGATTACG CTCAGGTTAG GCGAATCTAC GGGGGTACGT TGGCTGAATT GGGTGTTATT
CAAGGCTACC TAGCTCAAAT GTATACTCAA GTTGAGGCGC TTAGGGGCTT AATCTACTTG
ACTGCCTACA TGAGGGATAA GGGGTTGAGT GAATTCACTA AGTATGCTCA AGCGGCTAAA
TACCTAGGAT CAAGCACAGC GGTTAATGTT ACTAGGACTG CAATACAGGT AATGGGGGCT
GTTGGCTTAT CCACTGAATC ACCATTAGAG TACCTTTACA GGGATGCCAA GGCCACTGAG
GTTTACGAGG GATCCAATGA AGTTATCCTA TACTCATTAT TCAAAATGTT AAGGAAATAG
|
|---|
| Protein sequence | MHPLLEEVHE LLRRSTVEFA EARVEPLAKA IEVNGEYPRQ LMGELGKQGL LAPMAPPEYG
GGGLDFRGEV IIIEEVAKHS PTLATLMEVQ GALIIDSLLS HGSREVRERF LEGLVKGDLI
ASFALTEPCC GSDAGAIETR AVKDGGEWVI NGRKAWVTSG QYADLYLVFA RTGSIEERHR
AITAFLVPRG GCIEVNPMGV MGIRGGGTAE VSLRDCRVPD EYRVGEVNRG FYLAMEKLNL
GRTCVGAIGL GIAERAFTEA YDYAQVRRIY GGTLAELGVI QGYLAQMYTQ VEALRGLIYL
TAYMRDKGLS EFTKYAQAAK YLGSSTAVNV TRTAIQVMGA VGLSTESPLE YLYRDAKATE
VYEGSNEVIL YSLFKMLRK
|
|---|
| |