| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1897 |
|---|
| Symbol | |
|---|
| ID | 5709980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1973592 |
|---|
| End bp | 1974749 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641276405 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001541704 |
|---|
| Protein GI | 159042452 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3876] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.167595 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 0.972662 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGCGG TTGTTAGGAA TGGGGTTCAG GTATTCATTG ATGATGGTTA CGTGAATGAT
TTAAGAGACA GGAAAGTGGG TGTAGTAACA AACCACAGTG GCTACTACCC AGGTAGGGGG
CATTTAATAG ACTTATTGAT TGAAAACGGT GTTAAAGTTG AGGCAATCTT CACACCTGAG
CATGGGTTAA GGGGTCTTTT ACCTGCAGGT GAATCCTACA GTGATGAATC ATATAAGGGT
ATTCCAGTGT ATAGCCTATA TGGACCCAGG CGTAAACCAC CAGTAAACAT CCTTAAGGAA
CTTAACGCAG TAATCTACAG TATTCAGGAT GTTGGCGTCA GATTCTACAC ATACATATCC
ACACTCTACT ATACCCTTGA GGCCGCTGGT GAGGCTGGTG TTAAGGTTAT TGTACTTGAT
AACCCCAATC CATTAACCGG CACGGTGGTT GAGGGTCCTA TACTTGAGGC TGCGTTAAGG
TCCTTCGTGG GTATTTGGAG TATACCAATT AGGTATGGTT TAACCGCGGG TGAATTAGCC
ATGTTATTTA ATAATGAGGC TAACCTTAAG GCGGAGGTTG AGGTTATTAA ACTTGATGAC
TGGAGGAGGG GGATGTGGTT TGATGAGACT GGTTTACCGT GGGTGAAGCC GTCCCCGGCT
ATTGTTGATT TAAACAGTGC ATTAATGTAT CCTGGCATTG GCTTATTCGA GGGCACTAAC
GTTAATGAAG GTAGGGGGAC TGATGAACCC TTTAGGGTTA TTGGTGCACC TTGGCTAAAT
AACGTTAAGT TAATTGATGA GGCTTCTCAA TTAGGATTAA GGGGCGTGGA TTTAACCCCA
ATTGAGTATA GGCCATTGGG AACTGGGGTT AAGTATAATG GTGAGGAATG CAGGGGTGTT
GAAATAACAG TGAAGGATAG GGAGTCCCTG AGGCCTGTTA AACTGGCGTT TACATTAATT
TATTTACTAA GCAGAATTCA CCCCAGGGAG TTTAAGTTCC TTGAACATGA CGGTGTATAC
CACTTCGATT ACCTGGTGGG TAGACGGGGT GTTAGGGAAT TATTAATGGG TGGGAAGCTT
GATGAAGCGT TGAGTATTAT TGATGAGGGC ATTAGCGAGT ACATGAAGGG TATTAGGGGT
TACTTAATGT ATTATTGA
|
|---|
| Protein sequence | MRAVVRNGVQ VFIDDGYVND LRDRKVGVVT NHSGYYPGRG HLIDLLIENG VKVEAIFTPE
HGLRGLLPAG ESYSDESYKG IPVYSLYGPR RKPPVNILKE LNAVIYSIQD VGVRFYTYIS
TLYYTLEAAG EAGVKVIVLD NPNPLTGTVV EGPILEAALR SFVGIWSIPI RYGLTAGELA
MLFNNEANLK AEVEVIKLDD WRRGMWFDET GLPWVKPSPA IVDLNSALMY PGIGLFEGTN
VNEGRGTDEP FRVIGAPWLN NVKLIDEASQ LGLRGVDLTP IEYRPLGTGV KYNGEECRGV
EITVKDRESL RPVKLAFTLI YLLSRIHPRE FKFLEHDGVY HFDYLVGRRG VRELLMGGKL
DEALSIIDEG ISEYMKGIRG YLMYY
|
|---|
| |