| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1876 |
|---|
| Symbol | |
|---|
| ID | 5709151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | + |
|---|
| Start bp | 1951074 |
|---|
| End bp | 1952672 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641276384 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001541683 |
|---|
| Protein GI | 159042431 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.00850216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAGGC TGGGTCAAGC TAGGTTGATT GAGGCTGTGG CCGCGGTCTT AATAATAATT
ATATTATTCT CAATGCTTCC GCTTCTCTTT AAATCACCCC TTACACCACT TAGGAGTCAG
ATTCAGGTTG GTGTTAGTCA ATACGCCTAT AATTCATTAT ACACCCTGGT TACTAACCCA
TTATTCATAA ATGCCTTAAG TAAGGGTAAC TGGAGTACTA TACATTCATT GGCATCCGCC
ATAATTGGTC CTCAGTATAA TTGGTTCATT GGCCTTGAAC CCCTTTACAA GGCCTTAACC
ATAAGCTCAT ATAGTGTCAT GCCTAATTAC GTTGCCTTAA ACATAACCCT AGTACCAAGC
CCAAGCACAT ACGGTGGCTA TGCGTTAATT GATTTACCAA TCCTCTTAAT TAACCAGGGC
TTACCCCTCA GTTATAGGAT AAACACCAGT GTACCCATGG CTAACGTATT CATATTGAAT
AGTAATGGTA ATCCTGTTAA CTGGTGGTTA ATGAGTTATA ATTACGTCAC TGGGGATGCC
TTAATTTGGG TTAAGACTAG TTCAAGTAGG TTAACAATCA TTGTTTCCAG GAATGGTTCC
GTACCCTATA ATCCAATCAC CGGTGAATAC TGCAGTAACC CCTACTGCCC ACCCTACGGT
GGCTTAAGCT CATTCATGGC TACTTCACTG AATTTACCAA TAGCTAATTA TAATAATGGG
TTAAGCGTGC TTAGTCAATT GAATGGTTTA AACCAGTACT GGTGGTTTAA CCAATCTACT
GCATTATGCT CCGGCGCTTA CTCATTATCA GGTAACGTGC TTACTTTTAA TGTTCCTCAA
TCATCATCAG CATCATGCAC CTTACTTAAC CCATCAATAA TAGGTACGTA CACAACATTA
ATTGGGCAGT TAATGAGCAT AATACCTGGT TCATCATTAA GCATTAATTT GAATTACGTG
GTGACTGTGT ATAATGGAAC CAGAAGCTAC ACAGCCAAGG TGCCTGTTGC ATTAATCTTA
ACCTACTACG GTAATGGGAC TGTTAACTAT GAATTATATG TTAATGGGCA ATTAGCCTAT
GATAACAATG GGCCATACGT CTACTTATTC ATGATAAGCC TGCAGCCTTC AGTAACCCCA
GGAGTATGCT CCAGTGGTTC CTCATTATAC TACACCCTTA ATGAATCAGT GAGTATGTAT
GATTACGTAT CAATGACTAG TAAGTCAATA AGCGGTACGT ATCAGTCACC ATGCCTCCCC
CTCACATATA ATGGAGTAGC CTCAGCATCA GTGGCAATAA GCAGTAGCTC TGGGATAACC
CTGGGTTTAA ATTCCTCATA CACCCCTGGT GTGAATTATG AATATAACTC TGTGGTGAAG
ATCTATGACC TAGTAGCCAC GCCACCAGCC ACTTCAGCGG TGGTTGCTGG GGCTTACTTT
AATTACGCAA TAACCAGTAA TGTTATTCCA CAGTATTACG CATACAGTAT TCCTGGTTTA
CCATTCACCC CAACGGCAGG CGCCTTCACA GTCATAGTGC TACCTAATGG AACGTATTAC
TTAATTGCAC TTGAAATACA GGAGGTGAGT GGTGGATGA
|
|---|
| Protein sequence | MLRLGQARLI EAVAAVLIII ILFSMLPLLF KSPLTPLRSQ IQVGVSQYAY NSLYTLVTNP
LFINALSKGN WSTIHSLASA IIGPQYNWFI GLEPLYKALT ISSYSVMPNY VALNITLVPS
PSTYGGYALI DLPILLINQG LPLSYRINTS VPMANVFILN SNGNPVNWWL MSYNYVTGDA
LIWVKTSSSR LTIIVSRNGS VPYNPITGEY CSNPYCPPYG GLSSFMATSL NLPIANYNNG
LSVLSQLNGL NQYWWFNQST ALCSGAYSLS GNVLTFNVPQ SSSASCTLLN PSIIGTYTTL
IGQLMSIIPG SSLSINLNYV VTVYNGTRSY TAKVPVALIL TYYGNGTVNY ELYVNGQLAY
DNNGPYVYLF MISLQPSVTP GVCSSGSSLY YTLNESVSMY DYVSMTSKSI SGTYQSPCLP
LTYNGVASAS VAISSSSGIT LGLNSSYTPG VNYEYNSVVK IYDLVATPPA TSAVVAGAYF
NYAITSNVIP QYYAYSIPGL PFTPTAGAFT VIVLPNGTYY LIALEIQEVS GG
|
|---|
| |