| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1829 |
|---|
| Symbol | |
|---|
| ID | 5710081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1908503 |
|---|
| End bp | 1909333 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641276334 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001541636 |
|---|
| Protein GI | 159042384 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1533] DNA repair photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATCA TAGTTAAGGA GATTAAGGTT AAGAAAGCCC TAAGTAAATC CGGCCTACCC
GAGTACGACT ACGCCCTCAA CCCATACTTA GGCTGCCAGC ATGGTTGCAT ATACTGTTAT
GCAAGGGACT TCACCAAGGG GGAACCAGCC ATTAAGTGGG GTGAGGTCGT GTATGTTAAG
GTTAATTTAA TTGAAGTACT CAGCAGTGAG GTTAAGGGGC TTAGGAGAGG TGTTGTTGGT
TTATCAACAA TAACAGACCC CTATCAACCC ATTGAATCAA AGTATAGGCT CAGTAGAAGG
GCCTTAAGCC TACTTTGCGA TTCAGGATTC CATGTTAGTG TTCAAACCAA GTCAGCCCTA
GTGATTAGGG ATATTGATGT TCTTAAACAA TGCGGTGAAA TGGCTGATGT TGGCTTAACG
ATAACAACAA TGAGTGATTC ATATAAGTTA ATTGAACCAA ACACACCACC ACCGTTGGTT
AGGGCAATGA CCATTAGGAA GCTTGCTAAA GCTGGTGTAA AAACATGGAT ATTCCTAGGC
CCAATAATAC CAGGCATAAA TGACTCAAGG CTCAATTACG AGCCAATAAT TAGATTAGCC
AAGGAGACTA ACAGTCAATT AATAATAGAC AGGTTTAGGC CAAGGGAAAC AGCAGTAAGA
TTAATGAGGA CTAAATTAAA CATTAACCCA GTGCCAACAA ATAATTGGTG GAGAAGAGTA
GTAGGCGAAT TAACACAACT CTGCGATAGC TACGGCGTTA ACTGCATTAC TGAGGAGGAT
GAGTGGAGGA GTAGACGTAG GAATAACTCA ATACTCGACT ACTTAAAATA A
|
|---|
| Protein sequence | MSIIVKEIKV KKALSKSGLP EYDYALNPYL GCQHGCIYCY ARDFTKGEPA IKWGEVVYVK
VNLIEVLSSE VKGLRRGVVG LSTITDPYQP IESKYRLSRR ALSLLCDSGF HVSVQTKSAL
VIRDIDVLKQ CGEMADVGLT ITTMSDSYKL IEPNTPPPLV RAMTIRKLAK AGVKTWIFLG
PIIPGINDSR LNYEPIIRLA KETNSQLIID RFRPRETAVR LMRTKLNINP VPTNNWWRRV
VGELTQLCDS YGVNCITEED EWRSRRRNNS ILDYLK
|
|---|
| |