| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1755 |
|---|
| Symbol | |
|---|
| ID | 5709116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1830587 |
|---|
| End bp | 1831252 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641276266 |
|---|
| Product | 30S ribosomal protein S3Ae |
|---|
| Protein accession | YP_001541568 |
|---|
| Protein GI | 159042316 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1890] Ribosomal protein S3AE |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAAG CCCAGCAAGC GGCTACGCAG CAGAGGATAC CATTAGGGAA GTGGGCGTTT
AAGAAGTGGC TAACAGTCTA TGCACCAGCT TTCCTAGGGG GTCAGGCTAT AGTTGAAATT
CCAGTTGATG AACCCTCCAA GGCGGTGGGT AGGAATGTTG AGACAACCCT ATATGATTTA
ACTAAGGATT TATCACACAT TAACGTTAAG TTGAGGTTCA GGGTTAATGG TGTTGATGAT
GGTAGGGCTT TAACCCAGTT TAATGGAATG GAGTTAACGA GGGATTACGT TAGGAATCTT
GTTAGGAGGG GTTCAAGTAA GGTAATGGTT ATTAAGGATG TAACCACTAA GGATGGTGGG
AAATTAAGGA TGGAGGTTTT AGCCATAACC ACGTATAGAT GCACTAGGAC TCATAAGCAT
TTGATAAGGA AGTCAATAAT GGATAGGTTA GATAAGGTGG GTCAGGAATC CGACTTCGAT
TCATTAGTTA GGGATTCAAT AATGGGTAAG ATACAGGTTG ATTTATTTAA TGTAGCCAAG
AAGATATACC CGCTTAGGAA GGTTGAAATC ATTAAGATTA AGGTTCTTGA ATACCCAAGG
AAGCCGGAGG CAAAGCCTGA AATGGAGGCT GTTAAAGTAA CCCAGGAGGT TGCTCAACAG
CAGTAG
|
|---|
| Protein sequence | MAQAQQAATQ QRIPLGKWAF KKWLTVYAPA FLGGQAIVEI PVDEPSKAVG RNVETTLYDL
TKDLSHINVK LRFRVNGVDD GRALTQFNGM ELTRDYVRNL VRRGSSKVMV IKDVTTKDGG
KLRMEVLAIT TYRCTRTHKH LIRKSIMDRL DKVGQESDFD SLVRDSIMGK IQVDLFNVAK
KIYPLRKVEI IKIKVLEYPR KPEAKPEMEA VKVTQEVAQQ Q
|
|---|
| |