| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1693 |
|---|
| Symbol | |
|---|
| ID | 5709111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1771888 |
|---|
| End bp | 1772499 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641276201 |
|---|
| Product | SNARE associated Golgi protein |
|---|
| Protein accession | YP_001541506 |
|---|
| Protein GI | 159042254 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0586] Uncharacterized membrane-associated protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCTGC AATCACTGGT GAACGTGATT TTCATAGTGG AGAACATGGG TTATATGGGT
CTTTTCATAC TTATGACTCT GGAATCCCTA TCATTACCCA TTCCAAGCGA GGTAATACTA
CCGTTCACAG GATACTTAAT ATATATTGGC CGACTCAGTT TAATACCAGC CCTTATTGAT
TCGGTAATAG CTAGTCTAAT TGGATCATTA ATACTATACC TACTAAGCTA CTACGTGGGT
TACAGTATAG TTCTTAAGCT GGGTAAGTAC GTTGGCATAA GTAGAAGACA TTTGGACGCT
GCGGAGCAGT GGTTTAACAA GTATGGTGGT GTATCAGTGG TTTTAGCTAA ATTCATACCC
GGCATTAGGG CCTTAATATC AATACCAGCT GGAGTGGCTA GAATGAACGT GTGGTTATTC
ATGCTTTACA CTACAGTAGG TTCAACTATA TGGAATATAG TGTTAATTTA CATAGGCCTC
AGCCTAGGTC CAGCCTGGGA GACCGGGTTA ACCCTAGTGT CAAGGTACAT TGACTACCTT
GCCTTAGCCT TAATTGCAGT AGTAATAGTA CTTGTGATTG CGGCAAGGAA ACATTGGGTT
AAGTACGCTT AA
|
|---|
| Protein sequence | MVLQSLVNVI FIVENMGYMG LFILMTLESL SLPIPSEVIL PFTGYLIYIG RLSLIPALID
SVIASLIGSL ILYLLSYYVG YSIVLKLGKY VGISRRHLDA AEQWFNKYGG VSVVLAKFIP
GIRALISIPA GVARMNVWLF MLYTTVGSTI WNIVLIYIGL SLGPAWETGL TLVSRYIDYL
ALALIAVVIV LVIAARKHWV KYA
|
|---|
| |