| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1685 |
|---|
| Symbol | |
|---|
| ID | 5710368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caldivirga maquilingensis IC-167 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009954 |
|---|
| Strand | - |
|---|
| Start bp | 1761697 |
|---|
| End bp | 1762950 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641276193 |
|---|
| Product | cytochrome bd-type quinol oxidase subunit 1-like protein |
|---|
| Protein accession | YP_001541498 |
|---|
| Protein GI | 159042246 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1271] Cytochrome bd-type quinol oxidase, subunit 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.427643 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTCCC CAGTGGTAGC GACGGTTGCC TTAATTGCAT GGGCCTTCTC AGTGCACCTA
CCCCTAGTTT ACACTGTACT TGGCTTAGGT TGGTTGCTGC CCACTCTTGA GTTACTAGGG
TATAGGAGCG GTAGGAGGAC TTACATTGAT ATTGCGCACG GCTTATCAAG CTACCTAATA
GCCGTATACG CAATAGGCGG GGTCTTTGGA ACAATAGTGA CAGTCTTCTT GGCAGGCCTA
CTACCAGTCT TCACTAATAT AGCTGGTGCA TTGCTTTGGC CTGTTTGGGG TATTGCCATA
GTTTTTGGCG TAGCCATAGC GTTACCTCTC ATAGGCTTCT ACTACAGGTC ATTTAATAGG
CTTAGCCCGA TGAGGCATGT TGCAGTGGGT TACGGTATGG CCATTACTTT AACAGTAATC
CCAGTGATGT TTAGGTTAGT GTTCGCCTTC ATAAATTACC CTGCAGGGGT GGCAATAGCA
CCAAGCAGTA CATCTAATAC GGGCTTCACT TTATCAGTTA ATTTAACTGA GGCTTTAAGT
AACCCAACAT ATCCACCATT ACTCCTAGCC ACTTTATTTG GTGCAATAGC CATGACCAGT
ATCCTAGTAT CATCAATACA CGGCTGGAGG TATGCTTCAA GTAGGAGTGA ATACCATGAG
TTAGGTCATA GGATTGGTAA CACTGTGGGT TTAATCTTCG GTATACTGTA CTCCATCTTC
GCTGCCTGGT ACCTCTACAC AGTTTACCAG TATTCACCAA CGGTTGCATG GTCTATATTC
GGGCACCCAC CCTCATACTT ACCTTCGGCG TTCTACGGAT TATATAAACC AACCTTCAAC
CTGAGTTGGA TGCTTTACAT GAACATTGCC CTTGGAGCCG TAATCCTAAT TCTACTGGTG
GTCTCAATTA AAGTCACCAG TAAGCCTATT GAGGTGCTTA AACTCATATT AACACCAATG
CTAATGGATT CAGCTGAGGT AATGAATGGG TTGGCTCATG TCCCATACGC CATTGTTCCA
CCAGTTGCTG CAGCTGAGGC TTTGATTAAG GCTTATGGTC TAAGCTTCGC CCTTAACGTG
GCCAAGTGGT TAACGATTAG TCAACTCTTA ACCCCGCAAA TCAATGCATT ACTTAGCCTT
GTCTCAGTTC AACCAGGCCT ATTACTAGGT AGCCTAGTGT TCTTCGCATT CTTCAACGCC
CTACTGCTTT ACGTAATATA CGCTGCATTA TCCTGGAGGA GGAGCTTAGC CTAA
|
|---|
| Protein sequence | MVSPVVATVA LIAWAFSVHL PLVYTVLGLG WLLPTLELLG YRSGRRTYID IAHGLSSYLI
AVYAIGGVFG TIVTVFLAGL LPVFTNIAGA LLWPVWGIAI VFGVAIALPL IGFYYRSFNR
LSPMRHVAVG YGMAITLTVI PVMFRLVFAF INYPAGVAIA PSSTSNTGFT LSVNLTEALS
NPTYPPLLLA TLFGAIAMTS ILVSSIHGWR YASSRSEYHE LGHRIGNTVG LIFGILYSIF
AAWYLYTVYQ YSPTVAWSIF GHPPSYLPSA FYGLYKPTFN LSWMLYMNIA LGAVILILLV
VSIKVTSKPI EVLKLILTPM LMDSAEVMNG LAHVPYAIVP PVAAAEALIK AYGLSFALNV
AKWLTISQLL TPQINALLSL VSVQPGLLLG SLVFFAFFNA LLLYVIYAAL SWRRSLA
|
|---|
| |