| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cmaq_1648 |
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| Symbol | |
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| ID | 5709547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caldivirga maquilingensis IC-167 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009954 |
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| Strand | - |
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| Start bp | 1723034 |
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| End bp | 1724806 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641276156 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001541461 |
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| Protein GI | 159042209 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1955] Archaeal flagella assembly protein J |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.505042 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.00186987 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGACTTTG ATGAATTATC ACTAGTGGTT ACTGAACCAT TAGTCAACTG GTATGTTAAG
AGGCGTGGGG AGCAGTTAGA GAGGGTGCTG AAGAATGCTA AGGTTTACAT GCTTCCTGAA
AGATTCATGG CAAGGGTCTT CTTCGCAACA ATAATTACAG CCGTTCTCTC AGTACCCATT
GGATTATACT TAACCTACAA CAGTATTGAG TCAATTATGG GTTCATTTAA TTTAACGGTT
AAGTCAATTA CAGTTCTCAG CATAGGCTTA GTAATGATTG TCCTACCCTT CATAGTCTAC
GTAATGATGA TGACGCTACC TAAGATGCAG CTCTCCGACC TTCAATATAA GGTTGACTCA
GAATTACCCT TCTTCGCAGC GTACTTAGCC ATGATTTCCC AATCAGGGTT AAGCGTTACA
TCAGCCATAG AGAGGTTAGC CAACATTAGG CTACTTGAGG CCATAGGCAA GATAGCTAGG
GAAATAGTTG TTAAGAATAA GGCGATAGGC ATGGATCCGT TAACAGCCTT AACGGAATCA
GCGTTAAGCA CGCCAAGTCA CTTATTCCAA AACTTAATAA TGGGTTACGT AACTAACGTT
AGGACTGGGG GAGACATACT TCATTACCTT GAAATAAGGC TCAATGAAAT AGTTAACGAT
ACGCTTGATA AAATAAGGAG GGGTGCTGAA TTCCTATCAA CATTAATGGA ATCATACATT
GGGGCTGGGG TAATTCTACT AATAGGCCTT AACGTACTTT ACCTAGCCCA AGCAATAACA
CCAACAGGTA ACTCAGTGAG CGCGCTTCAG CAGGCGGTTA GTAATAATTT ACTCTTCGGT
CTATTGGTTA TCCCAGCAAT ATCAGTGGCG TTCATATACC TTGGTGAGGT CTCAATATAT
AGGGTCCCGT ACACTGACGT TAGGCCTTAT ATAGCGGTTG GTGTATCATC AATGGTAGCC
ATGGTGGCTC TACTAATAGG CTACAACACG GTGTTTCACG GTGACTTAGG CTACTCAATA
AACGTGGGCC CGGTTAGCCT GGATTTCGCA ACCTACATGG CGGTCGTCTT AATTATAGCC
TACGTCCCAG CAGCGTTATA TGCTGAGAGG GTTATTGCTG AGAGGCGTAG CCTTGAGAGG
GCCTTCTCAG ACTTCCTCAG GGACTTCACT GAGTTACGTA AAAGTGGCTT CACGCCTGAG
AAGATTATAA GCACGCTGGC TGACACTAGG GATTATGGTG CATTATCCAG GTACCTTAAG
GATATTAGTA AGCAGATTAG GTATGGTATA CCGATTAGGG TTGTCTTATC GGAATTCATG
AATAGGACAA GGTCCTATTA CGCCAGGGTT TTCGCATGGC TGCTGCTTGA GTCAATAGAG
TATGGTGGAG CAACCCCTGA GACCCTGGAG TCCCTTGCAT CATTCTCATC CCTAATGATT
AGGATTAATG ATGATTTACT CGCAAGGCTT AAGCCACTTA GGTTCGTACC CTACATAGGG
GCCATGATAC TTACCTTAAC CCTGGTGATT ATGGTGTTCA CCGTGGTTGG CTTATCCAGT
GTCTTCCTGC ATATTCCCCA ATACTACGTT AACTACGTCG TAGGTAGCTT CGCCTTAACC
ATTGTGGTTG ACTCATTCGT AATGGGTTTA GTGGCGGGTA AGCTGGGTGA GGGGGAGTTA
TCCGCTGGCT TTAAGCATGC AGTAGCCATA ACGGCAATAG TACTTGTAAT ATACTTAGCT
TCACCATTAA TATCAAAGGT GTTTGTAATA TGA
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| Protein sequence | MDFDELSLVV TEPLVNWYVK RRGEQLERVL KNAKVYMLPE RFMARVFFAT IITAVLSVPI
GLYLTYNSIE SIMGSFNLTV KSITVLSIGL VMIVLPFIVY VMMMTLPKMQ LSDLQYKVDS
ELPFFAAYLA MISQSGLSVT SAIERLANIR LLEAIGKIAR EIVVKNKAIG MDPLTALTES
ALSTPSHLFQ NLIMGYVTNV RTGGDILHYL EIRLNEIVND TLDKIRRGAE FLSTLMESYI
GAGVILLIGL NVLYLAQAIT PTGNSVSALQ QAVSNNLLFG LLVIPAISVA FIYLGEVSIY
RVPYTDVRPY IAVGVSSMVA MVALLIGYNT VFHGDLGYSI NVGPVSLDFA TYMAVVLIIA
YVPAALYAER VIAERRSLER AFSDFLRDFT ELRKSGFTPE KIISTLADTR DYGALSRYLK
DISKQIRYGI PIRVVLSEFM NRTRSYYARV FAWLLLESIE YGGATPETLE SLASFSSLMI
RINDDLLARL KPLRFVPYIG AMILTLTLVI MVFTVVGLSS VFLHIPQYYV NYVVGSFALT
IVVDSFVMGL VAGKLGEGEL SAGFKHAVAI TAIVLVIYLA SPLISKVFVI
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